FC875296
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 152 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697 +D LER GH + S+ P+G A+AS D+F+ +++ +A V +QF P G LA A +V+LW IP G K ++ + V SV +S DG+ +A+ S D +I V+ + R +FL+ L H VR +SP D R++ S S+D + ++D Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 152 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697 +D LER GH + S+ P+G A+AS D+F+ +++ +A V +QF P G LA A +V+LW IP G K ++ + V SV +S DG+ +A+ S D +I V+ + R +FL+ L H VR +SP D R++ S S+D + ++D Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 2 Query: 98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691 P L+ TGS D TVKL +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ +K + + +K +L +WSPDG +IA+GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 2 Query: 98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691 P L+ TGS D TVKL +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ +K + + +K +L +WSPDG +IA+GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11 Identity = 62/219 (28.31%), Postives = 100/219 (45.66%), Query Frame = 2 Query: 47 HEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYD 697 H +V++ ++ P + LL+GS D+TV+L D + GH V V+ P G A+AS D R++ D + ++V + F P G + G + ++WD +T + + L P V+S+A PDGR +++GS DG I+V+D+ K L + GH + SL YS + VL S D V ++D Sbjct: 524 HSGTVYSTSFSPDNK----YLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYV-FTGSSDKTCRMWDVSTGDSVRLFLGHTAP--------------VISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSK-EGNVLISGGADHTVRVWD 722
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11 Identity = 61/222 (27.48%), Postives = 94/222 (42.34%), Query Frame = 2 Query: 32 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697 ++ HEE V + + LL+TGS D T+K+ DD +++ T GH GV + G S S D V+V+ + + TL+ S V M T V G ++++WD T GL + V V + DG + SG D T+ ++D K L L GH V SL+Y + ++ S S DT + ++D Sbjct: 251 AILRGHEEHV-----ITCMQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAM---ANTTLVTGSRDCTLRVWDIET-------------GLHVRTLQGHQAAVRCVQF--DGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHSNRVYSLLYES-ERSIVCSGSLDTSIRVWD 448
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11 Identity = 52/200 (26.00%), Postives = 97/200 (48.50%), Query Frame = 2 Query: 98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691 P L+ TGS D TVKL +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ ++ + + +K +L +WSPDG +IA+GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11 Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2 Query: 92 TRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679 T L++ GS ++++ + ++ RT GH + S+ HP G AS S D+ ++++D+ + V ++F P G LA A +VKLWD +++ P P V V + P+ +ASGS D TI +D+ + + + +EG PVRS++++P D L+S D+ Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11 Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2 Query: 92 TRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679 T L++ GS ++++ + ++ RT GH + S+ HP G AS S D+ ++++D+ + V ++F P G LA A +VKLWD +++ P P V V + P+ +ASGS D TI +D+ + + + +EG PVRS++++P D L+S D+ Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 59/212 (27.83%), Postives = 94/212 (44.34%), Query Frame = 2 Query: 41 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 673 + H ++V AV + P +LL +GS D TV L T GH GV VA +P+G A+A+ D ++++D +T A + TL + V+ FD L +G +++LWD + + + P P V S A+S DG + + S+DG I ++D L L + PV ++P VL + D Sbjct: 37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231 The following BLAST results are available for this feature:
BLAST of FC875296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875296 ID=FC875296; Name=FC875296; organism=Citrus clementina; type=EST; length=699bpback to top |