FC875296

Overview
NameFC875296
Unique NameFC875296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  152 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A+ S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  152 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A+ S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691
            P L+ TGS D TVKL         +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   +K    +  + +K +L  +WSPDG +IA+GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  165 PQLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691
            P L+ TGS D TVKL         +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   +K    +  + +K +L  +WSPDG +IA+GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 62/219 (28.31%), Postives = 100/219 (45.66%), Query Frame = 2
Query:   47 HEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            H  +V++ ++ P  +     LL+GS D+TV+L   D      +  GH   V  V+  P G   A+AS D   R++  D    +       ++V  + F P G  +   G    + ++WD +T + +   L    P              V+S+A  PDGR +++GS DG I+V+D+   K L  + GH    + SL YS  +  VL S   D  V ++D
Sbjct:  524 HSGTVYSTSFSPDNK----YLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYV-FTGSSDKTCRMWDVSTGDSVRLFLGHTAP--------------VISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSK-EGNVLISGGADHTVRVWD 722          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 61/222 (27.48%), Postives = 94/222 (42.34%), Query Frame = 2
Query:   32 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            ++   HEE V     +   +    LL+TGS D T+K+   DD +++ T  GH  GV +      G    S S D  V+V+  +    + TL+   S V  M       T  V G    ++++WD  T             GL        +  V  V +  DG  + SG  D T+ ++D    K L  L GH   V SL+Y   +  ++ S S DT + ++D
Sbjct:  251 AILRGHEEHV-----ITCMQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAM---ANTTLVTGSRDCTLRVWDIET-------------GLHVRTLQGHQAAVRCVQF--DGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHSNRVYSLLYES-ERSIVCSGSLDTSIRVWD 448          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 52/200 (26.00%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691
            P L+ TGS D TVKL         +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   ++    +  + +K +L  +WSPDG +IA+GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  165 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   92 TRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            T   L++ GS   ++++   +  ++ RT  GH   + S+  HP G   AS S D+ ++++D+     +         V  ++F P G  LA A     +VKLWD     +++      P    P         V  V + P+   +ASGS D TI  +D+ + + +  +EG   PVRS++++P D   L+S   D+
Sbjct:   73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   92 TRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            T   L++ GS   ++++   +  ++ RT  GH   + S+  HP G   AS S D+ ++++D+     +         V  ++F P G  LA A     +VKLWD     +++      P    P         V  V + P+   +ASGS D TI  +D+ + + +  +EG   PVRS++++P D   L+S   D+
Sbjct:   73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 59/212 (27.83%), Postives = 94/212 (44.34%), Query Frame = 2
Query:   41 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 673
            + H ++V AV + P      +LL +GS D TV L          T  GH  GV  VA +P+G   A+A+ D  ++++D +T A + TL    + V+   FD     L  +G    +++LWD  +   +  +    P    P         V S A+S DG  + + S+DG I ++D      L  L +    PV    ++P    VL +  D
Sbjct:   37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231          
The following BLAST results are available for this feature:
BLAST of FC875296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WD51B_PONAB2.204e-1130.77WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WD51B_HUMAN2.204e-1130.77WD repeat-containing protein 51B OS=Homo sapiens G... [more]
SNR40_MOUSE2.204e-1126.50U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
SNR40_HUMAN2.204e-1126.50U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
TAF5_YEAST3.760e-1128.31Transcription initiation factor TFIID subunit 5 OS... [more]
SEL10_CAEBR3.760e-1127.48F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
SNR40_BOVIN4.910e-1126.00U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_MOUSE4.910e-1127.04Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN4.910e-1127.04Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
MUT11_CHLRE6.413e-1127.83Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]

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Properties
Property NameValue
Genbank descriptionC31402D05EF CTVClemen1 Citrus clementina cDNA clone C31402D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875296 ID=FC875296; Name=FC875296; organism=Citrus clementina; type=EST; length=699bp
GACCAACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACG
AGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCG
GCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGGGGCGGCC
CGACGACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAG
TCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTC
GACAGCTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTAC
TCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGG
GTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGG
GACACAGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGA
AGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAG
TTGCATGGAGTCCTGATGGCAGACGAATTGCTTCTGGTTCAATGGATGGC
ACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGA
AGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCCCCTGTTGATCCAC
GTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCACATGTATGATGC
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