FC875304

Overview
NameFC875304
Unique NameFC875304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875304_ssr356 microsatellite FC875304_ssr356:356..365. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig30 contig Ccv1_Contig30:400..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875304 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.225e-71
Identity = 142/201 (70.65%), Postives = 164/201 (81.59%), Query Frame = 3
Query:   57 TTPARTSSSQRHVSNIKPTQI-VCRAQ-KQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTR 632
            +TPARTS  +  V ++K  Q+ VCRAQ KQ+  + D     +VSRRLALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD  SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+LS+LTR
Sbjct:   14 STPARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTR 214          
BLAST of FC875304 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.823e-68
Identity = 125/165 (75.76%), Postives = 147/165 (89.09%), Query Frame = 3
Query:  150 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTR 632
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EGGFD +AVATANILE +++     PYY+LSVLTR
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTR 165          
BLAST of FC875304 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.228e-63
Identity = 125/192 (65.10%), Postives = 143/192 (74.48%), Query Frame = 3
Query:   69 RTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTR 632
            R    Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD  SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEGGF+P+AV TANILE S        YY + VLTR
Sbjct:   29 RDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTR 213          
BLAST of FC875304 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.665e-63
Identity = 126/195 (64.62%), Postives = 151/195 (77.44%), Query Frame = 3
Query:   66 ARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTR 632
            AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD  SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEGGF+ DAVATAN+LE+S        YY ++VLTR
Sbjct:   13 ARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTR 207          
BLAST of FC875304 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.667e-44
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 3
Query:  159 GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR-----PPYYFLSVLTR 632
            GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD  +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEGGF P+ V+ A++L+ S         YY   +L R
Sbjct:   31 GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVR 192          
BLAST of FC875304 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.051e-22
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 3
Query:  426 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTR 632
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE S +      YY+LSVLTR
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTR 73          
The following BLAST results are available for this feature:
BLAST of FC875304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP3_TOBAC1.225e-7170.65Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_BRAJU2.823e-6875.76Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.228e-6365.10Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.665e-6364.62Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE1.667e-4457.06Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH1.051e-2273.97Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31402E02EF CTVClemen1 Citrus clementina cDNA clone C31402E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875304 ID=FC875304; Name=FC875304; organism=Citrus clementina; type=EST; length=639bp
CGAAAAGAAAAAATGGGCTTCAACTCAATGCTNTCTTGCACCACCATGCA
CTCTCTACTACACCAGCAAGAACATCATCATCTCAGCGCCACGTGTCGAA
CATCAAGCCCACCCAGATTGTCTGCCGTGCGCAGAAGCAAGCTGTCCAAG
AAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATT
GGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGG
TGAATCTGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGACTTCTTGC
CATACAATGGAGATGGATTCAAGCTGTCGATTCCCTCAAAATGGAACCCC
AGCAAAGAGAGAGAGTTCCCAGGTCAGGTTCTTAGATACGAAGACAACTT
TGATCCCAACAGCAATGTCTCCGTCATAATCACCCCAACTGACAAGAAAT
CCATCACTGACTACGGTTCCCCCGAGGAATTCCTCAGTAAGGTGGACTAC
TTGCTGGGAAAACAAGCCTATTCCGGCAAAACTTCGTCTGAGGGTGGTTT
CGACCCTGATGCTGTGGCAACAGCTAACATCTTGGAGGCTTCAGTCCGAC
CACCATACTACTTCTTGTCTGTATTAACAAGACTGCTGA
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