FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PROVI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ispF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690
            R+G G D+H  + G  LI+GG+++P  +G + HSD DVLLH V DA+LGA  L DIG  FPD+ P++K   S + +K   +L+++ G+   N+DA L+L  PK++P+   +R N++  L  +  L
Sbjct:    2 RIGIGIDVHSFKEGRKLIVGGVDIPSPKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPDTSPEFKDIDSMILLKHVGKLLEKNGWRTVNVDAMLLLEAPKIAPFVVDMRKNIARCLQIETDL 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLSU (Bifunctional enzyme ispD/ispF OS=Wolinella succinogenes GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            G GFD+H    G  L + G+N+P     +AHSDGDV +H ++DA+LGA G  DIG+ FPDSD  +KG  S++ ++E ++ +   G+E+ N D T++   PKLSPYKE +   L E++
Sbjct:  216 GSGFDVHAFMEGEGLRLAGVNIPAPVTFKAHSDGDVAIHALIDALLGAAGAGDIGEWFPDSDLAYKGVDSTLLLQEVIKFIRGIGFELINADLTIMAQAPKLSPYKEAMERRLGEVM 332          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLPM (Bifunctional enzyme ispD/ispF OS=Wolbachia pipientis wMel GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  313 FRVGHGFDLHR---LEPGYPLIIG--GINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            FRVG G+D+H+   ++ G    I   G+ + H    EAHSDGDV +H +VDAILGALG  DIG+ FP S  +WK   SS F+  A +   E GY + NLD T++   PK+SPYK  ++  +S+ L  D
Sbjct:  232 FRVGAGYDIHKFIKVQNGAESFIKICGVKIEHNMAIEAHSDGDVAIHAIVDAILGALGCGDIGEHFPPSSSEWKDCNSSHFLDFAAKKAKEKGYSVSNLDITIVCEEPKISPYKVEMKKFISKALEID 359          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPG (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain G27) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DA+LGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+    PK++PYK  I  +LS+LLG +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAVLGAIKGGDIGEWFPDNDPKYKNASSKELLKVVLDFSQSIGFELLEMGATIFSEIPKITPYKPAILESLSQLLGLE 369          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMC5 (Bifunctional enzyme ispD/ispF OS=Campylobacter curvus (strain 525.92) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            G GFD H  E G  L + G  + +E G +AHSDGDV LH + DAILGA GL DIG++FPD+D ++KG  S + ++EA + +   G+E+ N D T++  RPK+S +K  +  N++  L   P
Sbjct:  214 GIGFDAHEFERGRELWLCGEKIEYEFGLKAHSDGDVALHALTDAILGAAGLGDIGELFPDTDAEFKGISSLLLLQEAYKKVQSVGFELVNADITIMAERPKISKFKRKMEANIAGALNLAP 334          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_GLOVI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gloeobacter violaceus GN=ispF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+G+G+D HRL  G  LI+GG+ +P+  G   HSD D+L H + DA+LGA  L DIG+ FP  DP+W+   S + + + + L+   G  + N+DA ++  RPKL+P+   IR +L+  LG
Sbjct:    9 RIGNGYDFHRLVEGRRLILGGVEIPYRLGLLGHSDADLLTHAITDALLGAACLGDIGRHFPPGDPQWQDVSSLLLLSKVLELVRGRGLRLSNVDAVVVAERPKLAPHIPAIRQSLAGALG 128          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMHC (Bifunctional enzyme ispD/ispF OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            G+GFD+H    G  + +GG+ +P E     HSD D  +H ++DAILGA GL DIG++FPD+D  +KG  S + +++ V  +   G++I N D T+I  +PK+SPYKE +   LSE+L
Sbjct:  215 GNGFDVHAFAKGEFITLGGVKIPCEYSLVGHSDADAAIHALMDAILGACGLGDIGELFPDTDDSFKGIDSKILLQKVVNFVHLLGFKIINADITIIAQKPKISPYKEKMCEILSEIL 331          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMFF (Bifunctional enzyme ispD/ispF OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 48/118 (40.68%), Postives = 79/118 (66.95%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            G+GFD+H  + G  + + G+ +P+ +   AHSDGDV LH + DA+LGA   PDIG+++PD+D K+K   S + ++ +V L+   G++I N D T+I   PK+SPYK+ +   ++++LG
Sbjct:  213 GNGFDVHAFKEGDFITLCGVKIPYSKAFIAHSDGDVALHALCDALLGAASAPDIGELYPDNDSKFKDIDSKILLQNSVNLIRSIGFDIINADITIIAQSPKISPYKDAMAKIVADILG 330          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_BARHE (Bifunctional enzyme ispD/ispF OS=Bartonella henselae GN=ispDF PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R G+G+D+H  E G  LI+ GI +P  +    HSD DV LH + DA+L   G  DIG  FP SDP+W+   S +F++ A+ ++ +AG  I N+D TLI   PK+ PY+  +  NL  +L
Sbjct:  237 RTGNGYDVHSFEEGNSLILCGIKIPFHKKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQWQNVSSEIFLRHALDIVKQAGGRIANVDITLIAEEPKIGPYRHAMVGNLMNML 355          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLTR (Bifunctional enzyme ispD/ispF OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +RVG G+D+HR           + I G+ + ++   EAHSDGDV +H VVDAILGALG  DIG  FP S P+WK   SS F+  A +   E GY + NLD T++   PK+SPYK  ++  +S+ L  D
Sbjct:  239 YRVGTGYDIHRFIKAQGKAKSFIKICGVEIEYDMKIEAHSDGDVAIHAVVDAILGALGCGDIGAHFPPSFPEWKDRNSSHFLDFAAKKAKEKGYSVSNLDITIVCEEPKISPYKVAMKKFISKTLEID 366          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PROVI3.840e-2440.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_WOLSU3.840e-2443.59Bifunctional enzyme ispD/ispF OS=Wolinella succino... [more]
ISPDF_WOLPM3.840e-2444.53Bifunctional enzyme ispD/ispF OS=Wolbachia pipient... [more]
ISPDF_HELPG3.840e-2443.80Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_CAMC53.840e-2443.80Bifunctional enzyme ispD/ispF OS=Campylobacter cur... [more]
ISPF_GLOVI5.016e-2441.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMHC5.016e-2443.59Bifunctional enzyme ispD/ispF OS=Campylobacter hom... [more]
ISPDF_CAMFF5.016e-2440.68Bifunctional enzyme ispD/ispF OS=Campylobacter fet... [more]
ISPDF_BARHE6.550e-2442.02Bifunctional enzyme ispD/ispF OS=Bartonella hensel... [more]
ISPDF_WOLTR8.555e-2444.53Bifunctional enzyme ispD/ispF OS=Wolbachia sp. sub... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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