FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 4.895e-57
Identity = 109/201 (54.23%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 IEQEYTL--LQKDVK-WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL  +  DV  WP                    A K + RD++++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  GI  GDQLW+ARY L R+ E  G+ +SF PKP++GDWNGAG H N STK MR  GG + I++AIEKL  RH+EHI  YG  N+ RLTG+HETA +  F  GVA RG+SIR+ R   KEG
Sbjct:  130 LEQEYTLFDMYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHTNVSTKEMRQPGGMKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEG 326          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 8.350e-57
Identity = 112/203 (55.17%), Postives = 132/203 (65.02%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYT L  D   PL                   A+K + RDIVD+HY+ACLYAGI +SG N EVMP QWEFQVGP  GIS GD LW+AR++L RI+E  G+V + DPKP+ GDWNGAGAH N STK+MR DGG   I+KA+ KL   H  HI AY    G+ N RRLTGKHET+ IN F  GVA RG SIR+ R    +G+
Sbjct:  139 IEQEYTFLDFDGH-PLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQDNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGK 340          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 217.624 bits (553), Expect = 1.543e-56
Identity = 111/201 (55.22%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVA RGASIR+ R   +E
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQE 332          

HSP 2 Score: 23.483 bits (49), Expect = 1.543e-56
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  331 QEKKGYFEDRR 341          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 2.011e-56
Identity = 113/204 (55.39%), Postives = 135/204 (66.18%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGR--DTEKEG 596
            +EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVA RGASIR+ R    EK+G
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNTRRLTGFHETSNINDFSAGVANRGASIRIPRTGGQEKKG 335          

HSP 2 Score: 23.483 bits (49), Expect = 2.011e-56
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  331 QEKKGYFEDRR 341          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 2.622e-56
Identity = 110/201 (54.73%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I+++IEKL  RH  HI AY    G  N RRLTG HET++IN F  GVA RGASIR+ R   +E
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQE 332          

HSP 2 Score: 23.483 bits (49), Expect = 2.622e-56
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  331 QEKKGYFEDRR 341          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 4.454e-56
Identity = 109/201 (54.23%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAGI +SG N EVM  QWE+QVGP  GI  GD LW++R+IL R+ E  G++ SFDPKPI G+WNGAG H N+STK+MR+DGG + I+ +IEKLG RH  HI AY    G  N R LTG HET++IN F  GVA RGASIR+ R   ++
Sbjct:  162 MEQEYTLLGTDGH-PFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIELSGTNAEVMAAQWEYQVGPCEGIQMGDHLWISRFILHRVCEDFGIIASFDPKPIPGNWNGAGCHTNFSTKAMRDDGGLKYIEDSIEKLGKRHQYHIRAYDPKGGLDNARALTGHHETSNINEFSAGVANRGASIRIPRSVGQD 361          

HSP 2 Score: 22.7126 bits (47), Expect = 4.454e-56
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  593 RKGYFEDRR 619
            +KGYFEDRR
Sbjct:  362 KKGYFEDRR 370          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 4.457e-56
Identity = 110/203 (54.19%), Postives = 135/203 (66.50%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            +EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVA RGASIR+ R   +E R
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKR 334          

HSP 2 Score: 22.3274 bits (46), Expect = 4.457e-56
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + ++GYFEDRR
Sbjct:  331 QEKRGYFEDRR 341          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.413e-56
Identity = 112/202 (55.45%), Postives = 133/202 (65.84%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTLL  +   P                    ADK +GRD+V+SHYKACLYAGI I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GVV + DPKP+ G+WNGAG H NYST+SMR +GG + I+ AIEKLG RH  HI  Y    G+ N RRLTG+HET+ I+ F  GVA RGASIR+ R   +EG
Sbjct:  133 MEQEYTLLGINGH-PYGWPENGFPGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDMGDHLWMARFILHRVCEDFGVVATLDPKPMTGNWNGAGCHTNYSTESMRVEGGLKHIEDAIEKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRIPRQVGQEG 333          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 5.810e-56
Identity = 109/201 (54.23%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTL+  D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GIS GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVA R ASIR+ R   +E
Sbjct:  134 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQE 333          

HSP 2 Score: 23.483 bits (49), Expect = 5.810e-56
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  332 QEKKGYFEDRR 342          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 215.698 bits (548), Expect = 5.810e-56
Identity = 108/201 (53.73%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVA RGASIR+ R   +E
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQE 332          

HSP 2 Score: 23.483 bits (49), Expect = 5.810e-56
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  331 QEKKGYFEDRR 341          
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_YEAST4.895e-5754.23Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA2_DROME8.350e-5755.17Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_BOVIN1.543e-5655.22Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_PIG2.011e-5655.39Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_CANFA2.622e-5654.73Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_SQUAC4.454e-5654.23Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_ACOCA4.457e-5654.19Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_XENLA5.413e-5655.45Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_MACFA5.810e-5654.23Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_MOUSE5.810e-5653.73Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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