FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: BPHB_RHOGO (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Rhodococcus globerulus GN=bphB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 57/188 (30.32%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVL----DKLWEINVKSSILLMQDA--APHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPG 636
            R Q +V +VT    G+G  + +R   EGA V +  R    ++   E   A G  V+ +   V      K  + K VE +G++D ++ NA V  Y+  L++  E  L    D+++ INVK  +L ++ A  A +  +G SV+F  S AG+ P    A+Y                E+ P  RVN +APG
Sbjct:    2 RLQDEVVLVTGGCAGLGRAIVDRFVCEGARVAVLDRSVAGLE---ELRAAHGDAVVAVEGDVRYLDSHKETVAKCVETFGKLDCYIGNAGVWDYSTALVEIPEDRLDEAFDEMYSINVKGYLLGVKAALGALYASRG-SVIFTVSNAGFYPAGGGALYTGAKHAIVGMVKQLAYELGPHIRVNGIAPG 185          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: YHXC_BACSU (Uncharacterized oxidoreductase yhxC OS=Bacillus subtilis GN=yhxC PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 52/203 (25.62%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   70 EKVNMAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISS-RKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPD-TRVNCVAPG-----FVPTHFA 657
            +K   AK+ +GK A++T    GIG  V+     EGA+VVI    + ++ ++  + ++  G++ + I   V +E    +++ +  + +  ID+ V NAA       + K     L + ++ N+ S   L +   PH++KGSS++  +SI  Y+    +  Y                 +     RVN VAPG      +P  FA
Sbjct:   31 DKPKKAKKLEGKTAIITGGDSGIGRAVSVLFAKEGANVVIVYLNEHQDAEETKQYVEKEGVKCLLIAGDVGDEAFCNDVVGQASQVFPSIDILVNNAAEQHVQPSIEKITSHQLIRTFQTNIFSMFYLTKAVLPHLKKGSSIINTASITAYKGNKTLIDYSATKGAIVTFTRSLSQSLVQQGIRVNAVAPGPIWTPLIPASFA 233          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 49/188 (26.06%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGI-ICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPT 648
            Q KVAVVT ++ GIG  +AE L  +G  VV++ R +  + +  ++++     V+   I  V++++    L++KT EK+G+ID+ V N+A    ++ + +      + + ++N+K ++  +    P M  Q    ++ I+SI+G++      +Y                E+A    RV  ++PG V T
Sbjct:    5 QDKVAVVTGASSGIGASIAETLANQGVKVVLTGRDESRLAEVAKRIQDNKQAVVETSIVDVTHKEEVTELVEKTKEKFGQIDILV-NSAGLMLSSAITEGDVEAWEAMIDVNIKGTLYTINAVLPSMLNQSSGHIINIASISGFEVTKKSTLYSASKAAVHSITQGLEKELAKTGVRVTSISPGMVDT 191          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABL_BACSU (Enoyl-[acyl-carrier-protein] reductase [NADPH] OS=Bacillus subtilis GN=fabL PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 56/188 (29.79%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPT 648
            Q K A+VT S++G+G   A RL   G ++VI+ +R +K   +  E+++ LG++V+ +  +V      K +  +  E +GR+DVFV NAA +     +++ +E+  D    IN K+ +   Q+AA  M+K  G  +V ISS+   +        GV              E++P    VN V+ G + T
Sbjct:    3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAA-SGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDT 189          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 56/194 (28.87%), Postives = 89/194 (45.88%), Query Frame = 1
Query:   82 MAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQ-KNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGS---SVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPT 648
            M K   GK A+VT S++GIG  +AER G E  +VV++        D+ +E +K  G + + +   VS E+  + L+D  +E +G +DV V N+  N   A   +       ++ ++NV  + L  + A  HM K +   +V+ ISS+    P      Y                  A    RVN +APG + T
Sbjct:    1 MYKDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIAT 194          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 53/188 (28.19%), Postives = 88/188 (46.81%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG-SSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPT 648
            R+ GKV VVT   +GIG G+       GA VVI  + +       ++L       + I+C V+ E   K L+ +T+ ++GR+D  V NA  +P      +T      +L E+N+  +  L + A P+++K   +V+ ISS+ G    +    Y                + +P   RVNC++PG + T
Sbjct:    6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG----AVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWT 189          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 54/197 (27.41%), Postives = 96/197 (48.73%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKY-GRIDVFVLNAAV--NPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQ--KGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDT-RVNCVAPGFVPTHFAQALL 669
            +G  A+VT  ++GIG  + E L   GA V   SR +K +D+ +E  +  G+ V G +C + +   R  L+      + G++++ V NA V  +  A D  +   +++      N +++  L Q A P ++  +  +V+F+SSIAG+    ++++Y                E A D  RVN VAPG + T   +  +
Sbjct:   20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNII---MGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAI 213          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: BUTA_STAEQ (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=butA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 51/186 (27.42%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS---VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPT 648
            K A++T S  G+G G+AERL  +G ++V+    +  + +  ++ K  G + +     VS ++ ++ L+   V ++G++DV V NA V+     +L+  E  L KL+ INV  ++  +Q AA    K  S   ++   SIAG++    +  Y                E+A     VN   PG   T
Sbjct:    3 KTAIITGSAGGLGKGIAERLANDGFNIVLQDINEALLLETEKEFKEKGYQAVAFKSDVSKKKEQEELVQFAVTEFGQLDVMVNNAGVDA-VTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKT 187          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: BPHB_PSEPU (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas putida GN=bphB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 53/191 (27.75%), Postives = 87/191 (45.55%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKAL----GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVL----DKLWEINVKSSILLMQDAAPHM-QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPG 636
            +  G+V ++T    G+G  + +R   E A V +       +DK+ E+L  L    G  V+G+   V + + +K    + V K+G+ID  + NA +  Y+  L+   E  L    D+++ INVK  I  ++   P +     +V+F  S AG+ P     +Y                E+AP  RVN V PG
Sbjct:    2 KLTGEVVLITGGASGLGRALVDRFVAERAKVAV-------LDKSAERLAQLETDHGDNVLGVTGDVRSLEDQKQAASRCVAKFGKIDTLIPNAGIWDYSTALIDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAVVGLVRELAFELAPYVRVNGVGPG 185          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: BPHB_BURXL (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=bphB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 52/191 (27.23%), Postives = 88/191 (46.07%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKAL----GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVL----DKLWEINVKSSILLMQDAAPHM-QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPG 636
            + +G+  ++T    G+G  + +R   EGA V +       +DK+ E+L  L    G  V+GI+  V + + +K    + V ++G+ID  + NA +  Y+  L+   E  L    D+++ INVK  I  ++   P +     +V+F  S AG+ P     +Y                E+AP  RVN V  G
Sbjct:    2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAV-------LDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSG 185          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
BPHB_RHOGO1.323e-1330.32Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
YHXC_BACSU1.727e-1325.62Uncharacterized oxidoreductase yhxC OS=Bacillus su... [more]
Y0419_STAS12.256e-1326.06Uncharacterized oxidoreductase SSP0419 OS=Staphylo... [more]
FABL_BACSU2.256e-1329.79Enoyl-[acyl-carrier-protein] reductase [NADPH] OS=... [more]
DHG2_BACSU2.256e-1328.87Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
DHB14_HUMAN2.256e-1328.1917-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
TRN1_DATST2.947e-1327.41Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
BUTA_STAEQ5.026e-1327.42Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
BPHB_PSEPU6.564e-1327.75Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
BPHB_BURXL8.573e-1327.23Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
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