FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: YVAG_BACSU (Uncharacterized oxidoreductase yvaG OS=Bacillus subtilis GN=yvaG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 54/202 (26.73%), Postives = 94/202 (46.53%), Query Frame = 1
Query:   82 MAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTR--VNCVAPGFVPTHFAQALLGN 675
            M    QGK A+VT ST GIG  +A  L  EGA+V+I+ R+++ V++ +++LK    E   ++   + +   +   ++  + Y  +D+ V N  +    A+     +    + +E+N+ S + L +    +M  +K   V+FI+S A   P   MA Y                E+A  T   VN V PG   T   + +L +
Sbjct:    1 MKLNLQGKTALVTGSTSGIGKAIASSLAEEGAAVIINGRREEKVNQTIDELKTQHAE--AVLYPAAFDLGTEEGCNELFQAYPEVDILVNNLGIFE-PAEYFDIPDDEWFRFFEVNIMSGVRLTRRYLHNMIEKKEGRVIFIASEAAIMPSQEMAHYSA-TKTMQLSISRSLAELATGTNVTVNTVMPGSTLTEGVETMLNS 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2403_STAAW (Uncharacterized oxidoreductase MW2403 OS=Staphylococcus aureus (strain MW2) GN=MW2403 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 50/195 (25.64%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQALLGND 678
            K+AVVT +  GIG  +A  L  EGA VV++ R ++ +     +L    ++V+     V+N++    LI    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++  +Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A   +D
Sbjct:    7 KIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVP--TDVTNKEEVDELIKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTVQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNPSD 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2370_STAAS (Uncharacterized oxidoreductase SAS2370 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2370 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 50/195 (25.64%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQALLGND 678
            K+AVVT +  GIG  +A  L  EGA VV++ R ++ +     +L    ++V+     V+N++    LI    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++  +Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A   +D
Sbjct:    7 KIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVP--TDVTNKEEVDELIKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTVQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNPSD 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 52/195 (26.67%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   82 MAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSR-KQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAV-NPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG---SSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPT 648
            M K  +GKV V+T S+ G+G  +A R   E A VV++ R K++  +  +E++K +G E I +   V+ E    NL+  +++++G++DV + NA + NP ++  +   +   +K+ + N+  + L  ++A  +  +     +V+ +SS+    P      Y                E AP   RVN + PG + T
Sbjct:    1 MYKDLEGKVVVITGSSTGLGKAMAIRFATEKAKVVVNYRSKEEEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSSIKEFGKLDVMINNAGMENPVSSHEMSLSD--WNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINT 193          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 49/194 (25.26%), Postives = 90/194 (46.39%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG--SSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALLGN 675
            +VA+VT +  GIG  +A     EGASV++S  + +  +KA  KL   G +   I   V+ E    + ++   ++YGR+D+ V NA +  + A + +      ++L ++ + +  + M+   P M+K     ++ I+S+ G    +  + Y                E AP    VN + PG+V T   +  L +
Sbjct:    4 QVALVTGAAGGIGFEIAREFAREGASVIVSDLRPEACEKAASKLAEEGFDAAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAGIQ-HVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSD 196          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2778_STAA8 (Uncharacterized oxidoreductase SAOUHSC_02778 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02778 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 50/190 (26.32%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQA 663
            KVAVVT +  GIG  +A  L  EGA VV++ R ++ +     +L    ++V+     V+N++    LI    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++   Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A
Sbjct:    7 KVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVP--TDVTNKEEVDELIKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAA 193          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2488_STAAC (Uncharacterized oxidoreductase SACOL2488 OS=Staphylococcus aureus (strain COL) GN=SACOL2488 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 50/190 (26.32%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQA 663
            KVAVVT +  GIG  +A  L  EGA VV++ R ++ +     +L    ++V+     V+N++    LI    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++   Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A
Sbjct:    7 KVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVP--TDVTNKEEVDELIKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAA 193          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2422_STAA3 (Uncharacterized oxidoreductase SAUSA300_2422 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2422 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 50/190 (26.32%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQA 663
            KVAVVT +  GIG  +A  L  EGA VV++ R ++ +     +L    ++V+     V+N++    LI    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++   Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A
Sbjct:    7 KVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVP--TDVTNKEEVDELIKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAA 193          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: SOU1_SCHPO (Sorbose reductase sou1 OS=Schizosaccharomyces pombe GN=sou1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 50/190 (26.32%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASV-VISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKY-GRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGY--QPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPGFVPT 648
            +GK  ++T  + GIG  +A+     G++V ++  R +K ++ A E     G++     C + N        ++ VE+  GR+DV + NA +      L    E +  K+  IN+  +    Q A  H +K    S++F +S++G+    P   A Y                E AP  RVN V+PG++ T
Sbjct:    8 KGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEWAPFARVNSVSPGYIDT 197          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 55/198 (27.78%), Postives = 89/198 (44.95%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPH---MQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALLGND 678
            +GKVAVVT    G+G G+A  LGL  A   I         + +E++ ALG   + +   +        L+D+ V ++G ID+ V NA +     D L+  E   D +  +N+KS   + Q AA H      G  ++ I+S+  +Q    +  Y                E A  +  VN +APG++ T+  Q L  ++
Sbjct:    9 EGKVAVVTGCDTGLGQGMA--LGLAQAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGL-IRREDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADE 203          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
YVAG_BACSU7.257e-1226.73Uncharacterized oxidoreductase yvaG OS=Bacillus su... [more]
Y2403_STAAW7.257e-1225.64Uncharacterized oxidoreductase MW2403 OS=Staphyloc... [more]
Y2370_STAAS7.257e-1225.64Uncharacterized oxidoreductase SAS2370 OS=Staphylo... [more]
DHG1_BACME7.257e-1226.67Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
YXJF_BACSU1.238e-1125.26Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
Y2778_STAA81.238e-1126.32Uncharacterized oxidoreductase SAOUHSC_02778 OS=St... [more]
Y2488_STAAC1.238e-1126.32Uncharacterized oxidoreductase SACOL2488 OS=Staphy... [more]
Y2422_STAA31.238e-1126.32Uncharacterized oxidoreductase SAUSA300_2422 OS=St... [more]
SOU1_SCHPO1.238e-1126.32Sorbose reductase sou1 OS=Schizosaccharomyces pomb... [more]
KDUD_ECOLI1.238e-1127.782-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]

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Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
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