FC875337 | Citrus Genome Database

Overview


Name	FC875337
Unique Name	FC875337
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	688

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14114	contig	Ccv1_Contig14114:20..709.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALF1_LAMJA (Fructose-bisphosphate aldolase, muscle type OS=Lampetra japonica PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.750e-28
Identity = 65/124 (52.42%), Postives = 82/124 (66.13%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA-PGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A+ + + G+GILA DES  T GKRL  IGLENT+ +R+ YR LL T  P + ++I G I F ET+YQ T  G   V ++ +  I+ GIKVDKG+VPLAG+N E   QGLDGLA R A Y
Sbjct:   15 ELADIAQRIVASGKGILAADESVGTMGKRLTQIGLENTDEHRRFYRQLLFTTDPSIKEHIGGIIFFHETMYQKTDGGVPFVKLVKDNGILVGIKVDKGVVPLAGTNGEGTTQGLDGLAERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 2.750e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOA_RAT (Fructose-bisphosphate aldolase A OS=Rattus norvegicus GN=Aldoa PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.750e-28
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELADIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 2.750e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOC_CARAU (Fructose-bisphosphate aldolase C OS=Carassius auratus GN=aldoc PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.580e-28
Identity = 65/124 (52.42%), Postives = 82/124 (66.13%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A+ + +PG+GILA DES  +  KRL  IG+ENTE NR+ YR LL TA   + + I G I F ETLYQ   DG     ++ ++ IV GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELQDIAQRIVAPGKGILAADESTGSMAKRLNPIGVENTEENRRLYRQLLFTADERMDKCIGGVIFFHETLYQKADDGTPFAKMIKDRGIVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 23.483 bits (49), Expect = 3.580e-28
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR+V+ I
Sbjct:  142 GADFAKWRSVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOA_RABIT (Fructose-bisphosphate aldolase A OS=Oryctolagus cuniculus GN=ALDOA PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.661e-28
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 4.661e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOA_PONAB (Fructose-bisphosphate aldolase A OS=Pongo abelii GN=ALDOA PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 4.661e-28
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 4.661e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOA_MOUSE (Fructose-bisphosphate aldolase A OS=Mus musculus GN=Aldoa PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.661e-28
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 4.661e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOA_HUMAN (Fructose-bisphosphate aldolase A OS=Homo sapiens GN=ALDOA PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.661e-28
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 4.661e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDOA_PANTR (Fructose-bisphosphate aldolase A OS=Pan troglodytes GN=ALDOA PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.899e-28
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIVGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 7.899e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVLKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALDCA_DANRE (Fructose-bisphosphate aldolase C-A OS=Danio rerio GN=aldoca PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.870e-26
Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 2

Query:  245 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAY 613
            EL + A  + SPG+GILA DES  + GKRL  IG+EN E NR+ +R +L TA   +   I G I F ETLYQ++ DG   V ++ ++ I  GIKVDKG+VPL G+N E+  QGLDGL+ R A Y
Sbjct:   15 ELHEIALRIVSPGKGILAADESIGSMGKRLNQIGVENNEENRRLFRQVLFTADDRIDNCIGGVIFFHETLYQNSDDGVPFVKMIKDKGITIGIKVDKGVVPLPGTNGETATQGLDGLSERCAQY 138

HSP 2 Score: 22.7126 bits (47), Expect = 1.870e-26
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  622 GARFAKWRTVVSI 660
            GA FAKWR V+ I
Sbjct:  142 GADFAKWRCVMKI 154

[Close]

BLAST of FC875337 vs. ExPASy Swiss-Prot
Match: ALF_TRYBB (Fructose-bisphosphate aldolase, glycosomal OS=Trypanosoma brucei brucei GN=ALD PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 2

Query:  236 YADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLA-GSNDESWCQGLDGLASRTAAYY 616
            Y  EL++TAK + +PG+G+LA DES  +C KR A IGL NT  +R+ YR L++   G  QYISG IL +ET+YQ    G+     L  + +VPGIK D GL PL  G+  E    GLDG   R   YY
Sbjct:   22 YEAELIETAKKMTAPGKGLLAADESTGSCSKRFAGIGLSNTAEHRRQYRALMLECEGFEQYISGVILHDETVYQKAKTGETFPQYLRRRGVVPGIKTDCGLEPLVEGAKGEQMTAGLDGYIKRAKKYY 149

The following BLAST results are available for this feature:

BLAST of FC875337 vs. ExPASy Swiss-Prot

BLAST of FC875337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56


Match Name	E-value	Identity	Description
ALF1_LAMJA	2.750e-28	52.42	Fructose-bisphosphate aldolase, muscle type OS=Lam...	[more]
ALDOA_RAT	2.750e-28	54.03	Fructose-bisphosphate aldolase A OS=Rattus norvegi...	[more]
ALDOC_CARAU	3.580e-28	52.42	Fructose-bisphosphate aldolase C OS=Carassius aura...	[more]
ALDOA_RABIT	4.661e-28	54.03	Fructose-bisphosphate aldolase A OS=Oryctolagus cu...	[more]
ALDOA_PONAB	4.661e-28	54.03	Fructose-bisphosphate aldolase A OS=Pongo abelii G...	[more]
ALDOA_MOUSE	4.661e-28	54.03	Fructose-bisphosphate aldolase A OS=Mus musculus G...	[more]
ALDOA_HUMAN	4.661e-28	54.03	Fructose-bisphosphate aldolase A OS=Homo sapiens G...	[more]
ALDOA_PANTR	7.899e-28	54.03	Fructose-bisphosphate aldolase A OS=Pan troglodyte...	[more]
ALDCA_DANRE	1.870e-26	50.81	Fructose-bisphosphate aldolase C-A OS=Danio rerio ...	[more]
ALF_TRYBB	3.088e-26	46.88	Fructose-bisphosphate aldolase, glycosomal OS=Tryp...	[more]

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Properties


Property Name	Value
Genbank description	C31402G11EF CTVClemen1 Citrus clementina cDNA clone C31402G11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875337 ID=FC875337; Name=FC875337; organism=Citrus clementina; type=EST; length=688bp
AAAGATACTGAAGATAAGATTATAAGTGCTATAAGCTAAGGCCTCTCGAG
CTCAGAACCCACAGCAAGAAGAAGCAAAGAGGAAAATGGCCTCAGCCTCG
GCATCTTTACTCAAGTCATCATCCCCCGTTCTTGACAAGTCTGAGTGGGT
TAAGGGCCAGGCCATCCGCCAGTCTACTGTCTCAGTCCGCAGCCTCCCCA
GTGGCCCCTCTTCCCTCACCATCCGTGCTGGTTCCTATGCCGATGAGCTC
GTCAAGACCGCGAAAACTGTTGCATCACCAGGACGTGGAATTTTGGCCAT
GGATGAGTCAAATGCAACTTGTGGAAAACGCCTTGCCTCAATTGGGTTAG
AGAACACTGAGGCTAACCGCCAGGCATACCGTACCCTCCTTGTTACAGCC
CCTGGTCTTGGACAGTACATCTCTGGTGCCATCCTTTTTGAGGAGACTCT
CTACCAATCCACCACCGATGGCAAGAAGATGGTCGATGTTCTTGTTGAGC
AAAACATTGTCCCCGGTATCAAAGTCGACAAGGGTTTGGTGCCCCTTGCT
GGTTCCAATGATGAGTCATGGTGCCAGGGTCTTGATGGCCTGGCTTCTCG
CACTGCTGCTTACTACCACAGGGAGCTCGTTTCGCCAAATGGCGTACTGT
TGTGAGCATTCCCATGGCCCATCTGCCTTGGCAGTCAA