FC875338

Overview
NameFC875338
Unique NameFC875338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 5.665e-68
Identity = 129/174 (74.14%), Postives = 139/174 (79.89%), Query Frame = 2 
Query:  164 GSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            G ++AKDYTDPPP PL DA EL  WS YRA+IAEFIA            IGYK QTD  A   D  C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVKAFQ +Y+ RYGGGAN LA GYS G GLAAEIIGTFVLV
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKGTGLAAEIIGTFVLV 187

HSP 2 Score: 23.0978 bits (48), Expect = 5.665e-68
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  189 TVFSATDPKRNA 200
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 9.633e-68
Identity = 133/187 (71.12%), Postives = 143/187 (76.47%), Query Frame = 2 
Query:  134 MAKDTGV---AEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            M KD  +   A  G ++AKDYTDPPP PL DA EL  WS YRA+IAEFIA            IGYK QTD  A   D  C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVKAFQ +Y+ RYGGGAN LA GYS G GL AEIIGTFVLV
Sbjct:    1 MGKDDVIESGAGGGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLV 187

HSP 2 Score: 23.0978 bits (48), Expect = 9.633e-68
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  189 TVFSATDPKRNA 200
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 9.635e-68
Identity = 129/184 (70.11%), Postives = 144/184 (78.26%), Query Frame = 2 
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            MAKD   A   ++  KDY+DPPP PL DA ELTKWS YRA+IAEF+A            IGYK QTD A +     C GVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVK FQ ++Y RYGGGANEL+ GYS G GLAAEIIGTFVLV
Sbjct:    1 MAKDIEAA--AAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLV 182

HSP 2 Score: 23.0978 bits (48), Expect = 9.635e-68
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  184 TVFSATDPKRNA 195
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 5.166e-66
Identity = 128/184 (69.57%), Postives = 138/184 (75.00%), Query Frame = 2 
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            M K+  V+   +  A+DY DPPP PL D  EL KWS YRALIAEF+A            IGYK QTD A N     C GVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVT GLFLARKVSLVRA++YM AQCLGAI GV LVK FQ S Y RYGGGANELA GYSTG GLAAEIIGTFVLV
Sbjct:    1 MGKEVDVSTLEAGGARDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLV 184

HSP 2 Score: 23.0978 bits (48), Expect = 5.166e-66
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  186 TVFSATDPKRNA 197
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.145e-65
Identity = 128/186 (68.82%), Postives = 138/186 (74.19%), Query Frame = 2 
Query:  134 MAKDTG-VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDG---CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            MAKD   V E G YSAKDY DPPP PL D  ELTKWS YRA IAEFIA            IGYK Q+D    + G   C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSLVRA++YM+AQC GAI G GL K FQKS+Y RYGGG N ++DGY+ G  L AEIIGTFVLV
Sbjct:    1 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDT--KIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLV 184

HSP 2 Score: 23.0978 bits (48), Expect = 1.145e-65
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  186 TVFSATDPKRNA 197
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 2.540e-65
Identity = 126/182 (69.23%), Postives = 137/182 (75.27%), Query Frame = 2 
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            M KD  + E  S S KDY DPPP   F+  EL KWSFYRA+IAEFIA            IG+KSQTD       CA VG+LGI+WAFGGMIF+LVYCTAGISGGHINPAVTFGLFLA KVSLVRAV YMVAQCLGA  GVGLVK FQ +YY RYGGGAN L+DGY+ GVG+ AEIIGTFVLV
Sbjct:    1 MTKDE-LTEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLV 181

HSP 2 Score: 23.0978 bits (48), Expect = 2.540e-65
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  183 TVFSATDPKRNA 194
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.633e-65
Identity = 125/184 (67.93%), Postives = 139/184 (75.54%), Query Frame = 2 
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            M K+  V   G    +DY DPPP PL D  EL +WS YRA+IAEF+A            IGYK QTD + + D   C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGA+ GV LVK FQ S+Y RYGGGANELA GYS G GLAAEIIGTFVLV
Sbjct:    1 MGKEADVEAGG---VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLV 181

HSP 2 Score: 23.0978 bits (48), Expect = 5.633e-65
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  183 TVFSATDPKRNA 194
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 3.610e-64
Identity = 123/181 (67.96%), Postives = 135/181 (74.59%), Query Frame = 2 
Query:  143 DTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            D    E G    +DY DPPP PL D  EL KWS YRA+IAEF+A            IGYK QTD + +     C+GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++YM AQ LGAI GV LVK FQ  +Y RYGGGANE++ GYSTG GLAAEIIGTFVLV
Sbjct:    6 DVSTLEAGGVRDRDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLV 186

HSP 2 Score: 23.0978 bits (48), Expect = 3.610e-64
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  188 TVFSATDPKRNA 199
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.775e-63
Identity = 125/176 (71.02%), Postives = 133/176 (75.57%), Query Frame = 2 
Query:  152 VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            V+E G +  KDY DPPP PL D  EL  WSFYRA+IAEFIA            IG+K+QT P      C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL RAV YMVAQCLGAI GVGLVKAF  + Y R GGGAN +ADGYSTG  L AEIIGTFVLV
Sbjct:    5 VSEEGRHG-KDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGP------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLV 173

HSP 2 Score: 24.2534 bits (51), Expect = 1.775e-63
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ SA
Sbjct:  175 TVFSATDPKRSA 186
[Close]
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.522e-62
Identity = 123/177 (69.49%), Postives = 132/177 (74.58%), Query Frame = 2 
Query:  152 VAEHG-SYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            V+E G ++  KDY DPPP PL D  EL  WSFYRALIAEFIA            IG+K QT P      C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA+ YM+AQCLGAI GVG VKAF K+ Y   GGGAN +ADGYS G  L AEIIGTFVLV
Sbjct:    5 VSEEGKTHHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGP------CDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLV 175

HSP 2 Score: 24.2534 bits (51), Expect = 2.522e-62
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ SA
Sbjct:  177 TVFSATDPKRSA 188
The following BLAST results are available for this feature:
BLAST of FC875338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PIP21_ORYSJ5.665e-6874.14Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE9.633e-6871.12Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_MAIZE9.635e-6870.11Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP24_ORYSJ5.166e-6669.57Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP27_MAIZE1.145e-6568.82Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP26_ARATH2.540e-6569.23Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ5.633e-6567.93Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_MAIZE3.610e-6467.96Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP28_ARATH1.775e-6371.02Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH2.522e-6269.49Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]

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Properties
Property NameValue
Genbank descriptionC31402G12EF CTVClemen1 Citrus clementina cDNA clone C31402G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875338 ID=FC875338; Name=FC875338; organism=Citrus clementina; type=EST; length=724bp
GNGATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAA
GGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGG
TGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCG
CCGAGATCATCGGCACCTTTGTCTTGGTTTAACTGTCTTCTCGGCCACTG
ATCCCAGAGAAAGCGCAGAGACTC
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