FC875341 | Citrus Genome Database

Overview


Name	FC875341
Unique Name	FC875341
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	674

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_ACIAD (Chaperone protein dnaK OS=Acinetobacter sp. (strain ADP1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.747e-45
Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A +++S+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+
Sbjct:   69 KRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQVSAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFGM 180

HSP 2 Score: 75.8702 bits (185), Expect = 2.747e-45
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS V + D+E L+G +AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVLEGDKVKVIENAEGTRTTPSIVAYKDSEILVGQSAKRQAVTNPKNTLF 66

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PSYWF (Chaperone protein dnaK OS=Psychrobacter sp. (strain PRwf-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.580e-45
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ D+ + P+K++        + VN    +K+ A  +IS+ +L KM++ AE YLG  + +AVVTVPAYFNDSQRQATKDAG IAGLNV RIINEPTAAA+AYG+
Sbjct:   69 KRLIGRRFDDKVVQKDIGMVPYKIVKADNGDAWVEVN----DKKMAPPQISAEILQKMKKTAEDYLGEKVTDAVVTVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGM 180

HSP 2 Score: 73.9442 bits (180), Expect = 3.580e-45
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS + + D E L+G +AK Q   NP NT++
Sbjct:    5 IGIDLGTTNSCVAVMEGDKVKVIENAEGTRTTPSIIAYKDGEILVGQSAKRQAVTNPNNTLY 66

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPW (Chaperone protein dnaK OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dnaK PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.580e-45
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G  K+ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+
Sbjct:   69 KRLIGRRFKDDEVQRDVDIMPFKIIG--ADNGDAWVEAQG--KKMAPPQISAEILKKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGI 180

HSP 2 Score: 76.2554 bits (186), Expect = 3.580e-45
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V   D+  +I N +G+RTTPS + +T  E L+G  AK Q   NPTNTVF
Sbjct:    2 GRIIGIDLGTTNSCVAVLDGDKARVIENAEGDRTTPSIIAYTADETLVGQPAKRQAVTNPTNTVF 66

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSL (Chaperone protein dnaK OS=Geobacter sulfurreducens GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.666e-45
Identity = 71/116 (61.21%), Postives = 89/116 (76.72%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++    V+ D+ + PFK++   AD     V  +G  K ++A EIS+MVL KM++ AE YLG T+ +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRKYDTEEVRKDISISPFKIVK--ADNGDAWVEARG--KMYSAPEISAMVLQKMKQTAEDYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGL 181

HSP 2 Score: 69.3218 bits (168), Expect = 4.666e-45
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V +     +IAN +G+RTTPS V F ++ ERL+G  AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVMEGGEPVVIANAEGSRTTPSMVAFAESGERLVGQQAKRQAVTNPENTLF 67

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.077e-45
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGL
Sbjct:  121 KRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGL 232

HSP 2 Score: 69.3218 bits (168), Expect = 6.077e-45
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            +G  +GIDLGTT SCV V +  + +++ N +G RTTPS V FT D ERL+G  AK Q   NP NT +
Sbjct:   52 KGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFY 118

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP75_HUMAN (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.077e-45
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGL
Sbjct:  121 KRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGL 232

HSP 2 Score: 69.3218 bits (168), Expect = 6.077e-45
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            +G  +GIDLGTT SCV V +  + +++ N +G RTTPS V FT D ERL+G  AK Q   NP NT +
Sbjct:   52 KGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFY 118

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP75_BOVIN (Stress-70 protein, mitochondrial OS=Bos taurus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.077e-45
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGL
Sbjct:  121 KRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGL 232

HSP 2 Score: 69.3218 bits (168), Expect = 6.077e-45
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            +G  +GIDLGTT SCV V +  + +++ N +G RTTPS V FT D ERL+G  AK Q   NP NT +
Sbjct:   52 KGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFY 118

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.077e-45
Identity = 69/124 (55.65%), Postives = 87/124 (70.16%), Query Frame = 3

Query:  303 PHEHRL*CKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            PH      KRLIGRRF D+ V+ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG   KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGL
Sbjct:  115 PHNTFYATKRLIGRRFDDSEVKKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHPAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGL 234

HSP 2 Score: 69.707 bits (169), Expect = 6.077e-45
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            +G  IGIDLGTT SCV V +  + +++ N +G RTTPS V FT D ERL+G  AK Q   NP NT +
Sbjct:   54 KGAVIGIDLGTTNSCVAVMEGKQAKVLENSEGARTTPSVVAFTADGERLVGMPAKRQAVTNPHNTFY 120

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_RHIEC (Chaperone protein dnaK OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.080e-45
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +V+ D  L PF ++ G      +  N KG    ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRRYEDPTVEKDKHLVPFSIVKGDNGDAWVEANGKG----YSPAQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181

HSP 2 Score: 70.0922 bits (170), Expect = 6.080e-45
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V      ++I N +G RTTPS V F+D  ERL+G  AK Q   NPTNT+F
Sbjct:    5 IGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLF 67

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_RHIE6 (Chaperone protein dnaK OS=Rhizobium etli (strain CIAT 652) GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.080e-45
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +V+ D  L PF ++ G      +  N KG    ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRRYEDPTVEKDKHLVPFSIVKGDNGDAWVEANGKG----YSPAQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181

HSP 2 Score: 70.0922 bits (170), Expect = 6.080e-45
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V      ++I N +G RTTPS V F+D  ERL+G  AK Q   NPTNT+F
Sbjct:    5 IGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLF 67

The following BLAST results are available for this feature:

BLAST of FC875341 vs. ExPASy Swiss-Prot

BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_ACIAD	2.747e-45	56.03	Chaperone protein dnaK OS=Acinetobacter sp. (strai...	[more]
DNAK_PSYWF	3.580e-45	58.62	Chaperone protein dnaK OS=Psychrobacter sp. (strai...	[more]
DNAK_SHEPW	3.580e-45	60.34	Chaperone protein dnaK OS=Shewanella piezotolerans...	[more]
DNAK_GEOSL	4.666e-45	61.21	Chaperone protein dnaK OS=Geobacter sulfurreducens...	[more]
GRP75_PONAB	6.077e-45	58.62	Stress-70 protein, mitochondrial OS=Pongo abelii G...	[more]
GRP75_HUMAN	6.077e-45	58.62	Stress-70 protein, mitochondrial OS=Homo sapiens G...	[more]
GRP75_BOVIN	6.077e-45	58.62	Stress-70 protein, mitochondrial OS=Bos taurus GN=...	[more]
GRP75_CHICK	6.077e-45	55.65	Stress-70 protein, mitochondrial OS=Gallus gallus ...	[more]
DNAK_RHIEC	6.080e-45	57.76	Chaperone protein dnaK OS=Rhizobium etli (strain C...	[more]
DNAK_RHIE6	6.080e-45	57.76	Chaperone protein dnaK OS=Rhizobium etli (strain C...	[more]

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Properties


Property Name	Value
Genbank description	C31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT