FC875341 | Citrus Genome Database

Overview


Name	FC875341
Unique Name	FC875341
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	674

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_LEIMA (Heat shock 70-related protein 1, mitochondrial OS=Leishmania major GN=HSP70.1 PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 6.081e-45
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  +Q D+K  P+K++ AG  D  +      G  KQ++  +I + VL KM+E AE +LG  + NAVVT PAYFND+QRQATKDAG IAGLNV+R++NEPTAAA+AYG+
Sbjct:   94 KRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWV----QDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGM 206

HSP 2 Score: 73.1738 bits (178), Expect = 6.081e-45
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1

Query:  118 KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            K +G  IG+DLGTTYSCV     D+  ++ N +G RTTPS V F  +E+L+G AAK Q   NP +T +
Sbjct:   24 KVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFY 91

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBY (Chaperone protein dnaK OS=Acinetobacter baumannii (strain AYE) GN=dnaK PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.923e-45
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+
Sbjct:   69 KRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAFGM 180

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-45
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS + + D E L+G +AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIIAYKDGEILVGQSAKRQAVTNPKNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBT (Chaperone protein dnaK OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dnaK PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 7.923e-45
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+
Sbjct:   69 KRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAFGM 180

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-45
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS + + D E L+G +AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIIAYKDGEILVGQSAKRQAVTNPKNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBC (Chaperone protein dnaK OS=Acinetobacter baumannii (strain ACICU) GN=dnaK PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.923e-45
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+
Sbjct:   69 KRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAFGM 180

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-45
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS + + D E L+G +AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIIAYKDGEILVGQSAKRQAVTNPKNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_ACIB5 (Chaperone protein dnaK OS=Acinetobacter baumannii (strain AB0057) GN=dnaK PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.923e-45
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+
Sbjct:   69 KRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAFGM 180

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-45
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS + + D E L+G +AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIIAYKDGEILVGQSAKRQAVTNPKNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_ACIB3 (Chaperone protein dnaK OS=Acinetobacter baumannii (strain AB307-0294) GN=dnaK PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.923e-45
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+
Sbjct:   69 KRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAFGM 180

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-45
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D+V++I N +G RTTPS + + D E L+G +AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIIAYKDGEILVGQSAKRQAVTNPKNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_HAHCH (Chaperone protein dnaK OS=Hahella chejuensis (strain KCTC 2396) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.923e-45
Identity = 68/116 (58.62%), Postives = 84/116 (72.41%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ D+K+ P+ +    AD     V+ KG  K+ A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYG+
Sbjct:   69 KRLIGRRFEDDVVQKDIKMVPYTI--AKADNGDAWVDVKG--KKMAPPQISAEVLKKMKKTAEDFLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGM 180

HSP 2 Score: 79.7221 bits (195), Expect = 7.923e-45
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + + D+  +I N +G RTTPS V +TD E L+G +AK Q   NPTNT+F
Sbjct:    2 GKIIGIDLGTTNSCVAILEGDKPRVIENSEGGRTTPSIVAYTDDETLVGQSAKRQAVTNPTNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_GEOUR (Chaperone protein dnaK OS=Geobacter uraniireducens (strain Rf4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.924e-45
Identity = 70/116 (60.34%), Postives = 91/116 (78.45%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++A EIS+MVL KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRKFDSEAVKKDIAISPFKIVK--ADNGDAWVEVRGQK--YSAPEISAMVLQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGL 181

HSP 2 Score: 69.707 bits (169), Expect = 7.924e-45
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1

Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV + +     +IAN +G+RTTPS V  TD+ ERL+G  AK Q   NP NT+F
Sbjct:    5 IGIDLGTTNSCVAIMEGGEPIVIANAEGSRTTPSMVAITDSGERLVGQQAKRQAVTNPENTLF 67

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCM (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.924e-45
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGL
Sbjct:   69 KRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 180

HSP 2 Score: 74.7146 bits (182), Expect = 7.924e-45
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V   D+  +I N +G RTTPS + +TD E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTDGETLVGQPAKRQAVTNPQNTLF 66

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCH (Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.924e-45
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGL
Sbjct:   69 KRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 180

HSP 2 Score: 74.7146 bits (182), Expect = 7.924e-45
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V   D+  +I N +G RTTPS + +TD E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTDGETLVGQPAKRQAVTNPQNTLF 66

The following BLAST results are available for this feature:

BLAST of FC875341 vs. ExPASy Swiss-Prot

BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP71_LEIMA	6.081e-45	57.26	Heat shock 70-related protein 1, mitochondrial OS=...	[more]
DNAK_ACIBY	7.923e-45	56.90	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIBT	7.923e-45	56.90	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIBC	7.923e-45	56.90	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIB5	7.923e-45	56.90	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIB3	7.923e-45	56.90	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_HAHCH	7.923e-45	58.62	Chaperone protein dnaK OS=Hahella chejuensis (stra...	[more]
DNAK_GEOUR	7.924e-45	60.34	Chaperone protein dnaK OS=Geobacter uraniireducens...	[more]
DNAK_VIBCM	7.924e-45	59.48	Chaperone protein dnaK OS=Vibrio cholerae serotype...	[more]
DNAK_VIBCH	7.924e-45	59.48	Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK ...	[more]

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Properties


Property Name	Value
Genbank description	C31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT