FC875343

Overview
NameFC875343
Unique NameFC875343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2979 contig Ccv1_Contig2979:25..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH313_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.13 OS=Oryza sativa subsp. japonica GN=GH3.13 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.935e-30
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAG 332
            +WP TKY+DVIVTG+MAQYIP L++Y GG LP+  TMYASSE YFG+NL P+  P EV YT++PNM Y+EF+  E     G    D + VDLV VEVG  Y+LV+TT+ G
Sbjct:  335 LWPRTKYIDVIVTGSMAQYIPLLEFYGGG-LPLVSTMYASSESYFGINLRPLDPPEEVVYTLLPNMCYYEFIKVE-KDGDGEKVRDGEVVDLVGVEVGAYYELVVTTFTG 442          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 43/110 (39.09%), Postives = 72/110 (65.45%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAG 332
            +WPN +Y+  I+TG+M  Y+  L +Y+GG LP+    Y +SE + G N+ P   P   ++T++P++AYFEF+P +P    G   ++ +PV L +V  G+ Y++V+TT+AG
Sbjct:  300 LWPNARYVYGIMTGSMEHYVKKLRHYAGG-LPLVAAEYGASEGWVGANVEPGTPPERATFTVLPDIAYFEFIPLKPVAGDG-GYAEAEPVGLTEVAAGELYEVVMTTFAG 407          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GHDC_HUMAN (GH3 domain-containing protein OS=Homo sapiens GN=GHDC PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 56/217 (25.81%), Postives = 92/217 (42.40%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNA------SRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQC 635
            +WP  + +  +  G  A+ +  L       L      YA+S    GLNL P        Y + P   + E LP +     G        + L + + GKEY+LV+T  A L R R+GD++RV G +N  P   F+ R +  LS+  +   E     A+  A      ++LL   +    E +I  ++     HY ++  L    + +  N + L+ C
Sbjct:  255 LWPKLQVVVTLDAGGQAEAVAALGALWCQGLAFFSPAYAASGGVLGLNLQP--EQPHGLYLLPPGAPFIELLPVKE----GTQEEAASTLLLAEAQQGKEYELVLTDRASLTRCRLGDVVRVVGAYNQCPVVRFICRLDQTLSVRGEDIGEDLFSEALGRAVGQWAGAKLL---DHGCVESSILDSSAGSAPHYEVFVALRGLRNLSEENRDKLDHC 462          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GHDC_MOUSE (GH3 domain-containing protein OS=Mus musculus GN=Ghdc PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 57/224 (25.45%), Postives = 96/224 (42.86%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYT-------ICANTKTIPG------HYVIYWELLIKDSANSPNNEVLNQC 635
            +WP  + +  + +G  A+ +  L       L      YA+S     LNL P  RP + SY + P + + E LP +     G        + L D +  KEY+LV+T +  L R R+GD+++V G +N  P   F  R    L++  + TDE     A+  A          VG++        +C  ++ +        HY ++ EL    + +  N + L+ C
Sbjct:  256 LWPKLQVVVTLDSGGQAEAVAALRVLWCQGLAFFSPAYAASGGVVALNLWPE-RP-QGSYLLPPGVPFIELLPIKE----GTQEEAASTLLLTDAQREKEYELVLTNHTSLTRCRLGDVVQVVGTYNQCPVVRFTCRLGQTLNVRGEVTDETVFSVALAQA----------VGQWPGAKLLDHVCVESRVLDSCEGSAPHYEVFVELRGLRNLSEENRDKLDNC 463          
The following BLAST results are available for this feature:
BLAST of FC875343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH313_ORYSJ6.935e-3058.18Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ORYSJ7.193e-1939.09Probable indole-3-acetic acid-amido synthetase GH3... [more]
GHDC_HUMAN6.521e-1225.81GH3 domain-containing protein OS=Homo sapiens GN=G... [more]
GHDC_MOUSE8.516e-1225.45GH3 domain-containing protein OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC31402H05EF CTVClemen1 Citrus clementina cDNA clone C31402H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875343 ID=FC875343; Name=FC875343; organism=Citrus clementina; type=EST; length=644bp
GAATCTGGCCTAACACAAAGTATCTTGATGTCATTGTTACTGGAGCAATG
GCACAGTATATTCCTACGCTTGATTATTACAGCGGAGGCAAATTGCCAAT
GGCATGCACCATGTATGCTTCATCAGAATGTTACTTTGGGTTAAATCTTA
ACCCCATATGCAGGCCATCAGAGGTTTCTTATACAATCATGCCAAACATG
GCCTACTTTGAGTTTCTTCCCCAAGAGCCTGCACACTCATTCGGGTTGAC
CAGCAGCGACCCGCAGCCTGTTGACCTTGTCGATGTCGAAGTGGGCAAAG
AATACCAGCTTGTGATCACAACTTACGCCGGCTTGTACAGATACCGAGTC
GGGGACATCCTCCGAGTGACCGGGTTCCACAACTCAGCCCCGCAGTTCCA
TTTCGTCAGAAGAAAGAACGTCTTACTCAGCATTGAATCCGACAAAACCG
ACGAGGCCAAACTGCAGAACGCCATCGACAACGCGTCCCGACTGCTCCGA
GAATTCAACACCAACGTCGGGGAATACACAATCTGTGCGAATACAAAGAC
AATCCCAGGTCACTACGTGATATACTGGGAACTTCTAATTAAGGACTCTG
CCAATTCTCCGAACAACGAAGTCCTGAACCAGTGCTGCTTGGCC
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