FC875345

Overview
NameFC875345
Unique NameFC875345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875345_ssr41 microsatellite FC875345_ssr41:41..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12758 contig Ccv1_Contig12758:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 47/129 (36.43%), Postives = 61/129 (47.29%), Query Frame = 1
Query:  343 PILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKE-----PIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            P LC NNCGFFGS AT N+CSKC + +   ++ +  A                       P  A S ++     E K+ + EP              + PKRC TC +RVG+TGF CRCG +FC  HRY
Sbjct:   10 PRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAKSE-KRAAAEPEEADG-------PPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRY 130          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  334 PEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSME----PSSGSSFGFAGVKAKEGP-------KRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            P  P LC N CGFFGS + MN+CSKC++++   ++Q  +A                K P  +     Q  P+EIK   +E     +  SS   A  + +  P        RC +CNK+VG+ GF C+CG+ FC  HRY
Sbjct:   13 PTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVA--------KAAVKNSLKLPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRY 142          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 50/142 (35.21%), Postives = 68/142 (47.89%), Query Frame = 1
Query:  295 EKMESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLA--AXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            E+ +S   T  QA E P LCV  CGFFGS + M++CSKC++ +   + Q  +A  A                EP  A  V+ +     +   S EPSS +              RC  CNK+VG+ GF C+CG+ FC  HRY
Sbjct:    4 EQNDSTSFTQSQASE-PKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPP-AVVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFCGEHRY 143          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 47/147 (31.97%), Postives = 64/147 (43.54%), Query Frame = 1
Query:  295 EKMESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQV-------GPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            E+ E+       A E   LC + CGFFGS  T NMCSKC++  +        ++                 P  A + D+ V        P    K   E ++ ++   A   AK  P RC  C K+VGL GF CRCG  FC+ HR+
Sbjct:   62 EEEEASTAAAAAADEQLALCSSGCGFFGSKETNNMCSKCYRDHLKATSPLFSSS---------------SSPATASTTDITVPIAPATTAPTPSLKGKEEEATAAASSSAAAAAK--PNRCVACRKKVGLLGFECRCGGTFCSTHRH 191          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP11_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 11 OS=Oryza sativa subsp. japonica GN=SAP11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 43/134 (32.09%), Postives = 58/134 (43.28%), Query Frame = 1
Query:  313 DETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            + T  +APE   LC N+CGF G+ AT N+C  C  A   +   +  AA                   +  S    V  V  +     P++G     +         RC +C +RVGLTGF CRCG L+C  HRY
Sbjct:   10 EPTELRAPE-MTLCANSCGFPGNPATNNLCQNCFLAASASSSSSSAAASPSTTSLPVFPVVEKPRQAVQSSAAAAVALVVER-----PTAGPVESSSKASRSSSVNRCHSCRRRVGLTGFRCRCGELYCGAHRY 137          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 47/137 (34.31%), Postives = 61/137 (44.53%), Query Frame = 1
Query:  304 ESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            +  + T  +APE   LC N+CGF G+ AT N+C  C  A   +       +                 P++     L   PVE      E +S  +   A V       RC+ C KRVGLTGF CRCG+LFC  HRY
Sbjct:    7 KDQEPTELRAPE-ITLCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPVLDKQPPRPAA----PLVEPQAPLPP-PVE------EMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRY 131          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 47/137 (34.31%), Postives = 61/137 (44.53%), Query Frame = 1
Query:  304 ESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            +  + T  +APE   LC N+CGF G+ AT N+C  C  A   +       +                 P++     L   PVE      E +S  +   A V       RC+ C KRVGLTGF CRCG+LFC  HRY
Sbjct:    7 KDQEPTELRAPE-ITLCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPVLDKQPPRPAA----PLVEPQAPLPP-PVE------EMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRY 131          
BLAST of FC875345 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 43/130 (33.08%), Postives = 60/130 (46.15%), Query Frame = 1
Query:  328 QAPEG-PILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRY 714
            QA  G P+LC + CGF+G+ AT++MCS C++   L    A +A                   + + S  +    V    FS   S  +      V+ K    RC +C K+VGL GF CRCG  +C  HRY
Sbjct:  196 QASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCL-LNGATMATGPSSSVAAASAATVATGAVTSDSCSVPSAEVNGAAFS---SKNNPEPATVVEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRY 321          
The following BLAST results are available for this feature:
BLAST of FC875345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SAP3_ARATH1.808e-1636.43Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP7_ARATH1.999e-1534.78Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ARATH5.816e-1535.21Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP12_ORYSJ4.924e-1431.97Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP11_ORYSJ2.444e-1332.09Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSJ1.213e-1234.31Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSI1.213e-1234.31Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP3_ORYSJ2.069e-1233.08Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC31402H07EF CTVClemen1 Citrus clementina cDNA clone C31402H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875345 ID=FC875345; Name=FC875345; organism=Citrus clementina; type=EST; length=716bp
AGAGAACTTGGAAGAAATTTTAAAAAAATAAAACGCCCCGTCTCTCTCTC
TCTCTCTGTCTCTTTTCTTTTTTATTTTTGCTTGGCCTCACTTTTTTTTT
TCTTTTTCAATATTATTACCTACGATTATCTCTTCGATTGAAGGCAAGCT
TTCACGTCCATAAAACGACGTCGATTAGTTTCAGTCTTGTCGGTTGATCA
AAACCTTGATTTTTGAAACTGATTTTTGGGGAATTTTTTTTTACAGATTA
ATTCGGTTCGATTTTGTAAATCAAGATCGGACGAATAGGAGGTAGAAAAG
ATGGAATCACATGATGAAACTGGATGCCAAGCTCCAGAAGGCCCCATTCT
TTGCGTCAACAATTGTGGCTTCTTCGGAAGTGCTGCTACCATGAATATGT
GTTCCAAGTGCCACAAGGCCATGATCCTTAATCAGGAACAGGCCCAACTA
GCAGCTTCATCTATTGGGAGCATTGTGCATGGCAGCTCCGGTGGGACTGG
CAAGGAGCCCATCATTGCTGGCAGCGTGGATCTACAAGTGGGACCAGTTG
AGATAAAGAAATTCTCCATGGAACCATCTAGTGGTTCTTCCTTTGGCTTC
GCAGGAGTGAAAGCAAAGGAAGGCCCTAAAAGGTGTACAACTTGCAATAA
ACGTGTCGGTTTGACAGGGTTCAATTGCAGATGTGGGAACCTCTTCTGTG
CAGTTCACCGATACTC
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