FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_DICDI (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Dictyostelium discoideum GN=nubp1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  278 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK-RTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ E ++ + N + V S KGGVGKST +  L++ L+      VG+ D D+ GPS+P ++  E   + ++ +    +   + L V  V F    +  A++ RGP  +G+I Q L    W +LDYLVID PPGT D  L++ Q
Sbjct:   49 EIEERMKTVKNKILVLSGKGGVGKSTFSSQLSFALSMDEKVEVGLLDIDICGPSIPKIMGLEGENIHISGQGWDPVYVQDNLAVMSVGFLLEKEEDAVIWRGPKKNGIIKQFLKDVYWNDLDYLVIDTPPGTSDEHLSIVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_YARLI (Cytosolic Fe-S cluster assembly factor NBP35 OS=Yarrowia lipolytica GN=NBP35 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT-IIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + + ++ + + + V S KGGVGKST +  L +  A  +   VG+ D D+ GPSLP M+  E   +  +    + I  ++ LG+  V F    Q  AI+ RG   +G+I Q L   +WG LDYLV+D PPGT D  L++ Q
Sbjct:   66 IKDRMKGVKHKILVLSGKGGVGKSTFSSLLGWGFASDLDREVGLMDIDICGPSLPKMMGSEGEQIHTSLSGWSPIYVSDNLGMMSVGFMLPNQDDAIIWRGAKKNGLIKQFLKDVDWGNLDYLVVDTPPGTSDEHLSVTQ 205          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_AEDAE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Aedes aegypti GN=AAEL010360 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  287 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 682
            E L+++ N + V S KGGVGKSTV   L+  +A +      G+ D D+ GPS P ++      +  +    + +  E   + L+S GF   S     I RGP  +G+I Q LT  +WG+LDYLV+D PPGT D  L+
Sbjct:   56 EKLKEVRNKILVLSGKGGVGKSTVTALLSRAMAQLNPERNYGVLDVDICGPSQPRVLGVLGEQVHQSGSGWSPVYVED-NLSLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQLDYLVLDTPPGTSDEHLS 191          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_GIBZE (Cytosolic Fe-S cluster assembly factor NBP35 OS=Gibberella zeae GN=NBP35 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII-PTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            L+ + + + V S KGGVGKST    LA+  A    + VGI D D+ GPS+P M+  E   + ++    + I   + L V  + F    +  A++ RGP  +G+I Q L   EWG+LD+L++D PPGT D  L++
Sbjct:   74 LENVKHKILVLSGKGGVGKSTFTSLLAHAFATNPDSNVGIMDTDICGPSIPKMMGVEGETVHVSGTGWSPIWVMDNLAVMSIQFLLPNRDDAVIWRGPKKNGLIKQFLKDVEWGDLDFLLVDTPPGTSDEHLSV 207          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_PHANO (Cytosolic Fe-S cluster assembly factor CFD1 OS=Phaeosphaeria nodorum GN=CFD1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPE------------------KRTIIPTEYLGVKLVSFGFSGQGRA---IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  + NIV V S KGGVGKS++   LA TL+  G  VG+ D D+ GPS+P     E   +   P                   ++T    E   +  +S GF    R+   I RGP  + ++ Q LT   W ++DYL+ID PPGT D  ++L +
Sbjct:    3 LDNVRNIVLVLSGKGGVGKSSITTQLALTLSLQGHTVGVLDIDLTGPSIPRFFGIEESKVRQAPGGWIPVDVHAQQTLSAHRLQKTAEGQEIGALSCMSLGFILPNRSDAVIWRGPKKTAMVRQFLTDVLWPKVDYLLIDTPPGTSDEHISLLE 156          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_CULQU (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Culex quinquefasciatus GN=CPIJ014142 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  287 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 682
            E L+++ N V V S KGGVGKSTV   L+  +A        G+ D D+ GPS P ++      +  +    + +  E   + L+S GF   S     I RGP  +G+I Q LT  +WG+LDYLV+D PPGT D  L+
Sbjct:   58 EKLREVRNKVLVLSGKGGVGKSTVTALLSRAMAQHNPDRNFGVLDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIED-NLSLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQLDYLVLDTPPGTSDEHLS 193          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_CAEEL (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Caenorhabditis elegans GN=F10G8.6 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  278 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ +   +I + + + S KGGVGKST+  NLA  LA   ++ V I D D+ GPS P M+  E+  +  + +  T +  +  L +  ++F    +  A++ RG   +G+I Q L   +WGE+DYL+ID PPGT D  ++L Q
Sbjct:   49 KIQDRFSRIKHKILILSGKGGVGKSTLTSNLARALASDPSKQVAILDVDICGPSQPRMMGVEDEEVHNSADGWTPVGIQPNLTLMSIAFLLGDKNDAVIWRGARKNGMIKQFLKDVDWGEVDYLLIDTPPGTSDEHISLVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_CAEBR (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Caenorhabditis briggsae GN=CBG03788 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  278 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ +   +I + + + S KGGVGKST+  NLA  LA   ++ V I D D+ GPS P M+  E+  +  + +  T +  +  L +  ++F    +  A++ RG   +G+I Q L   +WGE+DYL+ID PPGT D  ++L Q
Sbjct:   49 KIQDRFSRIKHKILILSGKGGVGKSTLTSNLARALASDPSKQVAILDVDICGPSQPRMMGVEDEEVHNSADGWTPVGIQPNLTLMSIAFLIGDKNDAVIWRGARKNGMIKQFLKDVDWGEVDYLLIDTPPGTSDEHISLVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_COCIM (Cytosolic Fe-S cluster assembly factor CFD1 OS=Coccidioides immitis GN=CFD1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 60/175 (34.29%), Postives = 80/175 (45.71%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE---------------------MNPEKRTIIP-----------------TEYLG-VKLVSFGFSGQGRA---IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  + NIV V S KGGVGKS+V + LA T    G  VGI D D+ GPS+P +V  E+  +                      +N  +R   P                 T + G ++ +S GF  + R    I RGP  + +I Q LT   WGE DYL+ID PPGT D  + L +
Sbjct:    3 LDGVKNIVLVLSGKGGVGKSSVTLQLALTFCLQGRSVGILDVDLTGPSIPRLVGLEDAKITQAPGGWLPVTVHPFHTPSSDGLNGSQRANKPDDSNESSSSTVETAPQSTNFCGSLRCMSLGFLLRDRGDAVIWRGPKKTAMIRQFLTDVLWGETDYLLIDTPPGTSDEHIALAE 177          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DANRE (Cytosolic Fe-S cluster assembly factor nubp2 OS=Danio rerio GN=nubp2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS---PENRLLEMNPEKRTIIP-TEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L ++ +++ V S KGGVGKST+   LA      G +VGI D D+ GPS+P M+S   PE    +         P  + L +  ++F       A++ RGP  + +I Q ++   WGELD L++D PPGT D  L + +
Sbjct:    9 LDQVKHVLLVLSGKGGVGKSTITTELALAFRHAGKKVGILDVDLCGPSIPRMLSVGKPEVHQCDSGWVPVYADPQQQQLALMSIAFLLEDSDEAVIWRGPKKTALIGQFVSDVAWGELDILLVDTPPGTSDEHLAVLE 146          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NUBP1_DICDI1.312e-1635.46Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NBP35_YARLI1.312e-1637.14Cytosolic Fe-S cluster assembly factor NBP35 OS=Ya... [more]
NUBP1_AEDAE1.713e-1637.96Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NBP35_GIBZE2.922e-1637.31Cytosolic Fe-S cluster assembly factor NBP35 OS=Gi... [more]
CFD1_PHANO3.817e-1634.42Cytosolic Fe-S cluster assembly factor CFD1 OS=Pha... [more]
NUBP1_CULQU4.985e-1638.69Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_CAEEL4.985e-1635.46Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_CAEBR4.985e-1635.46Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
CFD1_COCIM4.985e-1634.29Cytosolic Fe-S cluster assembly factor CFD1 OS=Coc... [more]
NUBP2_DANRE6.510e-1635.51Cytosolic Fe-S cluster assembly factor nubp2 OS=Da... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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