FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A +KV INGFGRIGR   R  +  +   +++V VND     K A+++LKYDS  G F  ++    N+ + ++GK +K  + RDP  +PW E G D V+E TGVF
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIAQDGNDLV-INGKKVKFYTERDPAVIPWKETGADYVVESTGVF 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGR  LR    RKD  ++VV VND   + N  A++++KYDS  G +K  V   D++ I +DG  I     RDP  LPW  L ID+ ++ TGVF
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKD--IEVVAVNDPF-ISNDYAAYMVKYDSTHGRYKGTVSH-DDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  +   + +V VND     K A+++L+YD+  G FK  ++ VD   + V+GK +K  + RDP  +PW+E G D ++E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFKGTIE-VDGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGR  LR    RK+  ++VV +ND    V  A+++ KYDS  G F  +V   D +++ +DGK + V   RDP  LPW    IDI I+ TG+F
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKN--IEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSH-DGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_YERE8 (D-erythrose-4-phosphate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=epd PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGR+ LR  +  GR+ + + VV +N+    +  +HLLKYDS  G F  DV+  + + + V   +I+++   +  QLPW ELGID+V++ +GV+
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELANAEGMAHLLKYDSSHGRFAWDVR-QECDKLYVGDDIIRLIHQPEIEQLPWGELGIDVVLDCSGVY 103          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGR  LR    RK+  ++VV +ND    V  A+++ KYDS  G F  +V   D + + +DGK + V   RDP  LPW    IDI I+ TG+F
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKN--IEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSH-DGKALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  +   + +V VND     K A ++L+YDS  G FK  + +  ++ + V+GK +K  + RDP  +PW+E G D ++E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGNFKGTIAVEGSDLV-VNGKKVKFYTERDPSAIPWSETGADYIVESTGVF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  363 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKAD-VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            AK+K+ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K D + + D+ T+    K + V ++R+P ++PWA  G DI++E TGVF D
Sbjct:    3 AKIKIGINGFGRIGRLVARVALKRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTD 107          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +A +K+ INGFGRIGR   R    R+D  L  V VND     +  +++ KYDS+ G +K  D+K+ D +T+    K + V  NR+P ++PW   G D V+E TGVF D
Sbjct:    1 MAPIKIGINGFGRIGRLVARVILQREDCEL--VAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTD 106          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F   VK+ DN+ + +    IK++   +P  LPW EL IDIV E TGV  D
Sbjct:    2 IRVAINGYGRIGRSILRALYESAKRDRIQIVAINELAKPEAMLHLTQYDTTHGRFHTQVKL-DNQHMIIGDDAIKLLHEPNPANLPWKELDIDIVYEATGVIND 104          
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
G3P_COLLN1.249e-1441.90Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_YEAST1.249e-1445.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_NEUCR1.631e-1442.16Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P2_KLUMA2.130e-1444.12Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
E4PD_YERE82.130e-1440.78D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
G3P3_KLUMA2.782e-1444.12Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P_SORMA3.633e-1441.18Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3PC_PEA3.633e-1441.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA3.633e-1441.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
E4PD_SHEHH3.633e-1440.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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