FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALSV (D-erythrose-4-phosphate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=epd PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+DIV++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDIVLDCTGVY 103          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +K+AING+GRIGRN LR  +   +D  + +V +N+    +   HL ++D+  G F+  V++  +  + V   LI + + +DP  LPW  LG+D+V++ TGVF
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINELAAPEAMVHLTRFDTSHGRFRYPVQLAGHSML-VGEDLISLFAEQDPANLPWRALGVDVVLDCTGVF 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR  LR    ++   ++V  +ND       +HLLKYD+  G FK  V++ + +   V+GK +KV + R+P  + WA+ G++IV+E TG F
Sbjct:    3 VKVGINGFGRIGRLALR--RIQEVEGVEVAHINDLTDPAMLAHLLKYDTTQGRFKGTVEVKE-DGFDVNGKFVKVTAERNPEDIQWADSGVEIVLEATGFF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A +KV INGFGRIGR   R  +  +   ++VV VND     + A+++LKYDS  G F  D++ V++  + V+ + +K  + R+P ++PWAE G + ++E TGVF
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDGLV-VNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVF 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            KV INGFGRIGR  LR  +  +   +DVV +ND    +    ++ KYDS  G FK  V+  D + + ++GK I V   RDP  +PW + G D V+E TGVF
Sbjct:    4 KVGINGFGRIGRIVLR--NALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVETKDGKLV-IEGKPISVFGERDPAAIPWGKAGADYVVESTGVF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  357 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +  K+K+ INGFGRIGR   R    R D  +++V VND     ++ + L KYDS+ G +K  +VK+ D +T+    K + V   R+P ++PW E+G + V+E TGVF D
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALQRDD--IELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTD 109          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +AK+K+ INGFGRIGR   R    R D  +++V VND    V+  +++ KYDS+ G +K  ++K  D++T+    K + V   R+P ++PW E G D V+E TGVF D
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTD 106          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A +KV INGFGRIGR   R  +  +   ++VV VND       A+++LKYDS  G FK +V+ VD + + V+GK ++  + R+P  + W+E G + V+E TGVF
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAVEHPDIEVVAVNDPFIETTYAAYMLKYDSSHGLFKGEVE-VDGKDLVVNGKKVRFYTERNPADIKWSETGAEYVVESTGVF 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    +    L+VV VND       +HLLKYD++ G F  +V++++     V+GK IK     D  +LPW +L ID+V+E TG + D
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVIEGG-FRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTD 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    +    L+VV VND       +HLLKYD++ G F  +V++++     V+GK IK     D  +LPW +L ID+V+E TG + D
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVIEGG-FRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTD 102          
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
E4PD_SALSV3.633e-1440.78D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_AERS43.633e-1437.25D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_LACLA4.745e-1441.58Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P_ERYGR4.745e-1440.00Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_CRYCU4.745e-1443.56Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3PC_TAXBA4.745e-1440.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY4.745e-1441.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_TRIKO4.745e-1441.90Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P1_STAES4.745e-1443.69Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ4.745e-1443.69Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
back to top