FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALTY (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhimurium GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALTI (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhi GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALPC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALPB (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALNS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella newport (strain SL254) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALHS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALG2 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SALEP (D-erythrose-4-phosphate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V+  + E + V   +I+++  R    LPW ELG+D+V++ TGV+
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVY 103
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
E4PD_SALTY4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALTI4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPK4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPC4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPB4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALNS4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALHS4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALG24.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALEP4.745e-1439.81D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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