FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875379_ssr452 microsatellite FC875379_ssr452:452..463. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10219 contig Ccv1_Contig10219:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  366 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            K++V INGFGR+GR  LR   G  +  L+ V +N+  GG   A+HLLK+DS+ G +  +V+  + E + +D   +       P  +PW + G+D+V+E +G F
Sbjct:    2 KIRVGINGFGRMGRLALRAAWGWPE--LEFVHINEIKGGAVAAAHLLKFDSVHGRWTPEVE-AEGERVLIDSTPLSFSEYGKPEDVPWEDFGVDLVLECSGKF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  366 KLKVAINGFGRIGRNFLRC-WHGRKDSP-LDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            K++V INGFGR+GR  LR  W    D P L+ V +N+  GG   A+HLLK+DS+ G +  +V+  + E + +DG  +       P  +PW + G+D+V+E +G F
Sbjct:    2 KVRVGINGFGRMGRLALRAAW----DWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWTPEVE-AEGERVLIDGTPLSFSEYGKPDDVPWEDFGVDLVLECSGKF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISV-----DGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            LKVAINGFGRIGR+ LR  +   K   ++VV VN+    +  +HLL+YDS  G F   V   D E + +     +   I+++   D   LPW +L +DIV++ TGV+
Sbjct:    3 LKVAINGFGRIGRSVLRALYESGKHHHINVVAVNELAEPEAMAHLLQYDSSHGRFFKPVS-HDQEHLFIAHENGERDDIRILHQSDITLLPWHDLDVDIVLDCTGVY 108          
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
G3P3_ANAVT8.376e-1136.89Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP8.376e-1139.05Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
E4PD_PHOPR8.376e-1140.19D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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