FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875379_ssr452 microsatellite FC875379_ssr452:452..463. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10219 contig Ccv1_Contig10219:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++VAINGFGRIGRN LR       + ++VV +ND G V+  +HLL++DS+ G F A V   D + I V    IKV + R+P +LPWA  G+D+ +E TG+F
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTSGD-DWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++VAINGFGRIGR  LR     K   +DVV +ND     + A+++ KYDS  G +  +V   D + I +DGK IK    RDP  LPW +  IDIVIE TGVF
Sbjct:    2 VRVAINGFGRIGRIVLRI--AMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEVTHDDKDLI-IDGKAIKCYQERDPADLPWGDNDIDIVIEATGVF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A  KV INGFGRIGR   R  +  +   +D+V VND     + A+++LKYDS  G FK D+K++ ++ + V+GK +K  + RDP  +PWAE     V+E TGVF
Sbjct:    1 MAPTKVGINGFGRIGRIVFR--NAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIKVL-SDGLEVNGKKVKFYTERDPANIPWAESEAYYVVESTGVF 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 689
            + + INGFGRIGR  LR    R D  + VV VND     + A+++ KYDS  G +K +V   D+  + +DG+ IKV   +DP  +PW + G+D VIE TGVF    GA
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSD--IKVVAVNDPFIAPEYAAYMFKYDSTHGRYKGEVTSKDDSLV-IDGQSIKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGA 107          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  H   D  +++V VND     + A+++LKYDS  G FK DV +  ++ + V GK ++  + RDP  +PW+E G D ++E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSD--VEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDVTVEGSDLV-VGGKKVRFYTERDPAAIPWSETGADYIVESTGVF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    R D  +++V +ND    +  ++ LKYDS  G F   V+++    + V+GK I+V S RDP  L W E+G+++V+E TG+F+
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVIKGALV-VNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFL 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  + + +D+V VND     + A+++LKYDS  G FK D+K VD   ++V+GK I+    +DP  +PW+E G   V+E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 689
            + V INGFGRIGR  LR    R D  + VV +ND     + A+++ KYDS    +K +V    N+ I++DGK I V   RDP+ +PW + G+D VIE TGVF    GA
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRAD--IKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSASGNK-INIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGA 107          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  +   +++V VND     K A+++LKYDS  G FK D++   +  ++V+ K I     RDP  +PW + G+D V+E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVF 102          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            KV INGFGRIGR  LR  +  +   ++VV +ND     + A ++ KYDS  G FK D+K VD + + +DGK IK    RDP  +PW + G + ++E TGVF
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIK-VDGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVF 101          
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
G3P2_RHOSH1.129e-1546.53Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P1_CANGA1.129e-1548.04Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_SCLSC1.475e-1543.81Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_DEBHA1.475e-1543.52Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CRYPA1.475e-1544.12Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3PC_LEIME1.475e-1542.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COCHE1.927e-1545.10Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_PICPA2.516e-1544.44Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PARBA2.516e-1542.16Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P1_TRIKO2.516e-1544.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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