FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875379_ssr452 microsatellite FC875379_ssr452:452..463. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10219 contig Ccv1_Contig10219:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD 102
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHESR (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD++ +  D  +IK++   DP +LPW E+ IDIV E TG  +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLVDDQMLIGDD-VIKILHEPDPAKLPWREMDIDIVYEATGAILD 104
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD++ +  D  +IK++   DP +LPW E+ IDIV E TG  +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLVDDQMLIGDD-VIKILHEPDPAKLPWREMDIDIVYEATGAILD 104
[Close]
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +K+AINGFGRIGRN +R  +     + + +V +N+    +  +HLLKYD+  G F   VK+ + +TISV G  I +    +P +LPW  LG+D+V+E TGV+
Sbjct:    3 IKLAINGFGRIGRNIVRALYESGLSNEIKIVAINELADPEAIAHLLKYDTSHGRFFFPVKLGE-DTISVAGDAIALFCEPNPAELPWKTLGVDVVLECTGVY 103
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
G3P1_STAAW2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC2.516e-1545.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_SHESR2.516e-1540.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESA2.516e-1540.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PSEHT2.516e-1542.16D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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