FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_PHOLL (D-erythrose-4-phosphate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAINGFGRIGR+ LR  +  GR+ + + V+ VN+    +  +HLLKYDS  G F  DV++ +N+ + V    I++    D   LPW ELGIDIV++ +G++
Sbjct:    3 IKVAINGFGRIGRSILRALYESGRR-AEIAVIAVNELADAEGIAHLLKYDSSHGRFAWDVRL-NNDVLQVGDDNIRLFHQSDISMLPWQELGIDIVLDCSGIY 103          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            ++V INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F+  V+ V    + V+GK I+V S RDP  L W E+ +D+V+E TG+F+
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVE-VQGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFL 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD++ +  D  +IK++   DP +LPW E+ IDIV E TG  +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLVDDQMLIGDD-VIKILHEPDPAKLPWHEMDIDIVYEATGAILD 104          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR  LR  +  +   ++VV VND    ++  +++ KYDS+ G FK  V+ V N +  VDG+ +KV + RDP  +PW  +G D V+E TGVF
Sbjct:    2 VKVGINGFGRIGRIVLR--NALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFKGTVE-VKNGSFVVDGRPMKVFAERDPAAIPWGSVGADYVVESTGVF 100          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  + + +++V VND     + A+++LKYDS  G FK D+K+  N+ ++++GK I+  + +DP  +PW+E G   V+E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFKGDIKVEGND-LTINGKTIRFYTEKDPANIPWSETGAYYVVESTGVF 101          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHESW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VDN  +  D   IK++   D  +LPW E+ IDIV E TGV +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQHKVKLVDNHMLIGDDA-IKILHEPDAAKLPWREMDIDIVYEATGVILD 104          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPC (D-erythrose-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VDN  +  D   IK++   D  +LPW E+ IDIV E TGV +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQHKVKLVDNHMLIGDDA-IKILHEPDAAKLPWREMDIDIVYEATGVILD 104          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD + + +    IK+    DP +LPW EL IDIV E TG  +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLVDGQ-MQIGDDTIKIFHEPDPAKLPWRELDIDIVYEATGAILD 104          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD 677
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F   VK+VD+  +  D   IK++   DP +LPW E+ IDIV E TGV +D
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQMQIVAINELAKPEAIIHLTQYDTTHGRFAHKVKLVDDHMLIGDDA-IKILHEPDPTKLPWHEMDIDIVYEATGVLLD 104          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  + + +++V VND     + A+++LKYDS  G FK D+K VD   ++V+GK ++    +DP  +PW+E G   V+E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVF 101          
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
E4PD_PHOLL2.516e-1543.69D-erythrose-4-phosphate dehydrogenase OS=Photorhab... [more]
G3PC_TRYBB3.286e-1542.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
E4PD_SHESM3.286e-1540.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P2_AGABI4.292e-1545.10Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_PHANO5.605e-1542.16Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
E4PD_SHESW5.605e-1541.35D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPC5.605e-1541.35D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEON5.605e-1540.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEB25.605e-1541.35D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_CURLU7.321e-1543.14Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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