FC875380

Overview
NameFC875380
Unique NameFC875380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15219 contig Ccv1_Contig15219:114..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA1_RHILT (Pyrophosphate-energized proton pump 1 (Fragment) OS=Rhizobium leguminosarum bv. trifolii GN=hppA1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 1 
Query:   37 GSAALVSLALFGAFVSRAAISTVD----------------VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG 402
            GSA L +L LF A+ +  +    +                +  P V  GL+ G ++PY F  + M +VG AA  +VEEVRRQF    G+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG
Sbjct:    1 GSAGLGALVLFAAYANDLSYFAANGDTYPYFKDIGEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISG 136
The following BLAST results are available for this feature:
BLAST of FC875380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA1_RHILT2.207e-1839.13Pyrophosphate-energized proton pump 1 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionC31403C09EF CTVClemen1 Citrus clementina cDNA clone C31403C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875380 ID=FC875380; Name=FC875380; organism=Citrus clementina; type=EST; length=664bp
AACACCACTGCAGCTATCGGAAAGGGTTTCGCCATTGGTTCTGCAGCTCT
TGTGTCGCTAGCCCTCTTTGGTGCCTTTGTGAGCCGTGCAGCTATTTCAA
CTGTTGATGTGTTGACTCCAAAAGTGTTTATTGGTTTGATTGTTGGTGCT
ATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGC
AGCTCTTAAAATGGTTGAGGAAGTGCGCAGGCAATTTAACACCATCTCTG
GTCTTATGGAAGGCACTGCCAAACCTGATTATGCTACCTGTGTTAAGATC
TCCACCGATGCATCCATCAAAGAGATGATCCCACCTGGTGCCCTTGTCAT
GCTTACACCCCTTATTGTTGGTATCTTTTTTGGTGTGGAAACTCTCTCTG
GGGTCCTTGCCGGTTCCCTTGTCTCAGGTGTACAGATTGCTATCTCTGCA
TCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTACATTGAGGCTGG
CGCTTCAGAGCACGCCAGAACTCTTGGTCCAAAAGGATCAGATCCACACA
AGGCTGCGGTCATTGGTGACACAATTGGGGATCCATTGAAGGACACATCT
GGACCATCACTTAACATCCTAATCAAGCTAATGGCAGTGGAATCACTTGT
TTTTGCTCCCTTTT
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