FC875382

Overview
NameFC875382
Unique NameFC875382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:7..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.448e-47
Identity = 95/188 (50.53%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +P     KY+GRGPIQ++ NYNY  C                 ATDPV+SFK+A+WFWMT Q P
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSP 241          

HSP 2 Score: 26.9498 bits (58), Expect = 1.448e-47
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  658 KPSCHEVITDEWN 696
            KPSCH+VI   WN
Sbjct:  242 KPSCHDVIIGRWN 254          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.179e-47
Identity = 96/176 (54.55%), Postives = 116/176 (65.91%), Query Frame = 2
Query:  149 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYP   GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q P
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSP 237          

HSP 2 Score: 23.8682 bits (50), Expect = 4.179e-47
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  658 KPSCHEVITDEWN 696
            KPSCH VI   W+
Sbjct:  238 KPSCHNVIIGAWS 250          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 4.183e-47
Identity = 96/176 (54.55%), Postives = 116/176 (65.91%), Query Frame = 2
Query:  149 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYP   GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q P
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSP 215          

HSP 2 Score: 23.8682 bits (50), Expect = 4.183e-47
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  658 KPSCHEVITDEWN 696
            KPSCH VI   W+
Sbjct:  216 KPSCHNVIIGAWS 228          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.096e-47
Identity = 91/184 (49.46%), Postives = 113/184 (61.41%), Query Frame = 2
Query:  119 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF  QT HETTGGW  AP G Y+WGYCF  EI   + YC  +  +P     KY+GRGPIQL++NYNY                    A+DPV+SFK+A+WFWMT Q P
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSP 248          

HSP 2 Score: 27.7202 bits (60), Expect = 7.096e-47
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT +W
Sbjct:  249 KPSCHDVITGQW 260          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.259e-47
Identity = 95/187 (50.80%), Postives = 114/187 (60.96%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q P
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSP 241          

HSP 2 Score: 24.6386 bits (52), Expect = 9.259e-47
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VI   W
Sbjct:  242 KPSCHDVIIGRW 253          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.670e-46
Identity = 96/187 (51.34%), Postives = 114/187 (60.96%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q P
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSP 231          

HSP 2 Score: 26.9498 bits (58), Expect = 2.670e-46
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT  W
Sbjct:  232 KPSCHDVITGRW 243          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 101/217 (46.54%), Postives = 125/217 (57.60%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP----------------SHHATKSLPTNGTISN 706
            CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   + REIAAF  QT HETTGGW  AP G YAWGYCF+ E   PS YC  +  +P   GK YYGRGPIQ++WNYNY +C                 ATDPV+SFK+A+WFWMT Q P                +  A   LP  GT++N
Sbjct:   51 CGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTN 261          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.698e-46
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T R RE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +P     KYYGRGPIQ+++NYNY  C                 AT+ V+SFKSAIWFWMTAQ P
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSP 247          

HSP 2 Score: 26.9498 bits (58), Expect = 7.698e-46
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT  W
Sbjct:  248 KPSCHDVITGRW 259          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.004e-45
Identity = 91/173 (52.60%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATD ++SFKSAIWFWMT Q P
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSP 229          

HSP 2 Score: 26.9498 bits (58), Expect = 1.004e-45
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT  W
Sbjct:  230 KPSCHDVITGRW 241          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.308e-45
Identity = 94/187 (50.27%), Postives = 113/187 (60.43%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q P
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSP 235          

HSP 2 Score: 26.9498 bits (58), Expect = 1.308e-45
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT  W
Sbjct:  236 KPSCHDVITGRW 247          
The following BLAST results are available for this feature:
BLAST of FC875382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_SOLTU1.448e-4750.53Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_GOSHI4.179e-4754.55Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_GOSHI4.183e-4754.55Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI9_ORYSJ7.096e-4749.46Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU9.259e-4750.80Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU2.670e-4651.34Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA4.957e-4646.54Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI3_TOBAC7.698e-4651.46Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU1.004e-4552.60Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC1.308e-4550.27Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionC31403C11EF CTVClemen1 Citrus clementina cDNA clone C31403C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875382 ID=FC875382; Name=FC875382; organism=Citrus clementina; type=EST; length=722bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCACGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACCATC
AGCAATGACGTAACGCCGGCCG
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