FC875382

Overview
NameFC875382
Unique NameFC875382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:7..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.770e-45
Identity = 99/201 (49.25%), Postives = 121/201 (60.20%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ---PPSH 664
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   R RE+AAF  QT HETTGGW  AP G ++WGYCF  E +PPS YC  +      P R KYYGRGPIQL++N+NY                    ATD  +SFK+A+WFWMT Q   P SH
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGR-KYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSH 256          

HSP 2 Score: 23.0978 bits (48), Expect = 3.770e-45
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPS H+VIT  W
Sbjct:  252 KPSSHDVITGRW 263          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.918e-45
Identity = 94/187 (50.27%), Postives = 112/187 (59.89%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q P
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSP 231          

HSP 2 Score: 26.9498 bits (58), Expect = 4.918e-45
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT  W
Sbjct:  232 KPSCHDVITGRW 243          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.351e-45
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:  161 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN-LNYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ---PPSH 664
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  + +E+AAF AQT HETTGGW  AP G YAWGYCF+SE +    YC+  ++P     KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q   P SH
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSH 246          

HSP 2 Score: 24.6386 bits (52), Expect = 8.351e-45
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  652 ATKPSCHEVITDEW 693
            A KPS H+VIT  W
Sbjct:  240 ANKPSSHDVITGRW 253          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.330e-44
Identity = 92/174 (52.87%), Postives = 110/174 (63.22%), Query Frame = 2
Query:  167 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHHA 670
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +P   GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ   PS HA
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHA 248          

HSP 2 Score: 24.2534 bits (51), Expect = 5.330e-44
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  652 ATKPSCHEVITDEWN 696
            A KPS H VIT +W+
Sbjct:  241 APKPSSHAVITGQWS 255          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 2.003e-43
Identity = 98/205 (47.80%), Postives = 119/205 (58.05%), Query Frame = 2
Query:  116 CGSGVVCGE----RDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHHA 670
            CGS   CG+    + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +P   GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ   PS HA
Sbjct:   43 CGSTPYCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHA 245          

HSP 2 Score: 24.2534 bits (51), Expect = 2.003e-43
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  652 ATKPSCHEVITDEWN 696
            A KPS H VIT +W+
Sbjct:  238 APKPSSHAVITGQWS 252          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.444e-43
Identity = 91/177 (51.41%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHHA 670
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R R++AAF AQT HETTGGW  AP G +AWGYCF  E    + YC  +  +P   GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ   PS HA
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHA 193          

HSP 2 Score: 23.8682 bits (50), Expect = 4.444e-43
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  652 ATKPSCHEVITDEWN 696
            A KPS H VIT +W+
Sbjct:  186 APKPSSHAVITGKWS 200          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.700e-43
Identity = 92/177 (51.98%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQP--PSHHA 670
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   + RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +P   GK YYGRGPIQL+ NYNY                    ATD  + FK+AIWFWMTAQP  PS HA
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHA 193          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.151e-42
Identity = 89/197 (45.18%), Postives = 113/197 (57.36%), Query Frame = 2
Query:  116 CGSGVVCGERDTGH----------GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI--SPPSPYC--NLNYPRRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CGSG  C  + +G           G  G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   R RE+AAF AQT HETTGGW  AP G Y+WGYCF  E   +  S YC  +  +P     KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q P
Sbjct:   51 CGSG--CQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSP 243          

HSP 2 Score: 25.409 bits (54), Expect = 8.151e-42
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH V+T +W
Sbjct:  244 KPSCHAVMTGQW 255          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 5.219e-41
Identity = 82/169 (48.52%), Postives = 104/169 (61.54%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPSHHA 670
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+  E   P  YC  +  +P     KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ P   A
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSA 171          

HSP 2 Score: 23.8682 bits (50), Expect = 5.219e-41
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  658 KPSCHEVITDEWN 696
            KPS H+VIT  W+
Sbjct:  168 KPSAHDVITGRWS 180          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.498e-40
Identity = 87/187 (46.52%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPRRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +P     KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q P
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSP 239          

HSP 2 Score: 26.5646 bits (57), Expect = 1.498e-40
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VIT +W
Sbjct:  240 KPSCHAVITGQW 251          
The following BLAST results are available for this feature:
BLAST of FC875382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_ORYSJ3.770e-4549.25Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_SOLTU4.918e-4550.27Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIX_PEA8.351e-4550.00Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SECCE5.330e-4452.87Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU2.003e-4347.8026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE4.444e-4351.41Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU6.700e-4351.9826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_ORYSJ8.151e-4245.18Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC5.219e-4148.52Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI3_ORYSJ1.498e-4046.52Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31403C11EF CTVClemen1 Citrus clementina cDNA clone C31403C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875382 ID=FC875382; Name=FC875382; organism=Citrus clementina; type=EST; length=722bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCACGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACCATC
AGCAATGACGTAACGCCGGCCG
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