FC875383

Overview
NameFC875383
Unique NameFC875383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.396e-53
Identity = 104/227 (45.81%), Postives = 131/227 (57.71%), Query Frame = 1
Query:    4 YIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDTF 669
            Y E H K P +      +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KIPDP+AVKP+DWDEDAP +I DE+A KPEGWL           A KP            AP+I NP+CE+APGCG W+RP+  NP YKGKW  P IDNP+Y+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FD F
Sbjct:  214 YEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNF 438          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.377e-47
Identity = 99/226 (43.81%), Postives = 123/226 (54.42%), Query Frame = 1
Query:   10 EHHLKNPPSVP-----SDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDTF 669
            E H K PP V      +D+ TH+YT ++ PD+   +LID +   +   L  DD  PP+                   RAKIPDP AVKPEDWDE+ P +IED  AVKP+GWL           A KP            AP I NP C+   GCGEWK PM  NP YKG W  P I+NPNY+G+W PQ+IPNP+YFE D P      +A+G+E+W+M   I FD F
Sbjct:  207 EKHAK-PPDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLL--DDVVPPINPPREIDDPSDKKPEEWDDRAKIPDPTAVKPEDWDENEPAQIEDSSAVKPDGWLDDEPKFIPNPKAEKPEDWSDDMDGEWEAPHIPNPACQI--GCGEWKPPMIDNPKYKGIWRPPMINNPNYQGLWSPQKIPNPDYFEDDHPFLLTSFSALGLELWSMTPDIYFDNF 427          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.839e-46
Identity = 97/226 (42.92%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   10 EHHLKNPPSVP-----SDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDTF 669
            E H K PP V      +D+ TH+YT ++ PD+   +L+D     K + L  +D  PP+                   RAKIPDP AVKPEDWDE  P +IED   VKP GWL           A KP            AP+I NP C    GCGEWK PM  NP YKG W  P +DNPNY+GIW P++IPNP+YFE D P      +A+G+E+W+M   I FD F
Sbjct:  207 EKHAK-PPDVDLKKFFTDRKTHLYTLVMNPDDTFEVLVDQTVVNKGSLL--EDVVPPIKPPKEIEDPNDKKPEEWDERAKIPDPSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQILNPACRI--GCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLTSFSALGLELWSMTSDIYFDNF 427          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.033e-44
Identity = 99/239 (41.42%), Postives = 126/239 (52.72%), Query Frame = 1
Query:    1 EYIEHHLKN-PPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDTF*YQG--*ESAESIG 705
            EY E HL + P S+    +T++YT I+KPD    + I+G+  ++ +     DF PP++                    +IPDP+AVKP+DWDEDAP  I D DAVKPE WL           A KP              +I NPKC    GCGEWK PM RNP Y+G W  P I NP + G W P++IPNP+YF+ D P  F P+  VG E+WTMQ  I F    Y G   E AE +G
Sbjct:  182 EYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFY--DFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNI-YVGHSIEDAERLG 417          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.726e-44
Identity = 96/226 (42.48%), Postives = 117/226 (51.77%), Query Frame = 1
Query:   10 EHHLKNPPSVP-----SDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDTF 669
            E H K PP V      +D+ TH+YT ++ PD+   +LID     K + L  +D  PP+                   RAKIPD  AVKPEDWDE  P +I D  AVKP+GWL           A KP            AP I NP C    GCGEW  PM  NP YKG W  P IDNPNY+GIW P++IPNP+YFE + P       A+G+E+W+M   I FD F
Sbjct:  203 EKHAK-PPDVDLKRFFTDRKTHLYTLVMNPDDTFEVLIDQIVVNKGSLL--EDVVPPINPPKEIEDPTDEKPDDWDERAKIPDASAVKPEDWDESEPPQIVDSSAVKPDGWLDNEPEFIPDPNAEKPFDWNEDMDGEWEAPHISNPACRI--GCGEWSPPMIDNPKYKGIWRPPMIDNPNYQGIWSPRKIPNPDYFEDNHPFLLTSFRALGLELWSMTSDIYFDNF 423          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 88/224 (39.29%), Postives = 109/224 (48.66%), Query Frame = 1
Query:   10 EHHLKNPPSVPS----DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP--DFEPIAAVGIEIWTMQDGILFD 663
            E+H   P ++ S    D  TH++T ++KP  E  + +DG+     N ++  D  P L                   R  I D  AVKP+DWDE+ P  + DE A KP  W            A KP            AP IDNP C+   GCG WK P  +NP YKGKW  P I NP +KG W  + I NPNYFE  KP     PI AVGIE+WTM + ILFD
Sbjct:  208 EYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMS--DVTPALTPPKQIFDETDLKPVDWDERENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSWEAPLIDNPACKGLSGCGTWKAPTIKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFE-PKPFAGLAPITAVGIEMWTMSENILFD 428          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 73/217 (33.64%), Postives = 96/217 (44.24%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            H +K       D  TH+YT I+  DN   + IDGE+ +     A  DF PP                      KI DPDA KPEDWDE     I+DED  KPE W            A KP             P +DNP+ +     GEWK   K+NPAYKGKW  P I+ P+Y         P+ N +      ++ I A+G ++W ++ G +FD
Sbjct:  153 HMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPP---------------------KKIKDPDAKKPEDWDERE--FIDDEDDKKPEDW--DKPEHIPDPDAKKPEDWDDEMDGEWEPPMVDNPEYK-----GEWKPKQKKNPAYKGKWIHPEIEIPDY--------TPDDNLYV-----YDDIGAIGFDLWQVKSGTIFD 326          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 66/215 (30.70%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   22 KNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFD 663
            K  P   +D L+H YTA++K D    +L+D  +K+       +D++  ++                     + DP+  KPEDWD++ P +I D DA +P+ W                                           G+W+ PM  NP YKG+W A  I NP YKG+WKP+ IPNP Y   DK   F+ IAAVG ++W ++ G +FD
Sbjct:  154 KKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTL--EEDWE--ILKPKTIPDPEDKKPADWVDEPDMVDPEDKKPEDWDKE-PAQIPDPDATQPDDWDEEED--------------------------------------GKWEAPMISNPKYKGEWKAKKIPNPAYKGVWKPRDIPNPEYEADDKVHIFDEIAAVGFDLWQVKSGTIFD 325          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 70/207 (33.82%), Postives = 91/207 (43.96%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDF-EPIAAVGIEIWTMQDGILFD 663
            D  TH YT I++PDN   +LID E+ +  N     DF  P                    RA IPDPD  KPEDWD+  P  I D DA KPE W                              ++D          GEW+ PM  NP +KG+W    +DNPNYKG W+  +I NP Y   DK    + I  +G ++W ++ G +FD
Sbjct:  166 DVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAP----KKIKDPTATKPEDWDDRATIPDPDDKKPEDWDK--PEHIPDPDATKPEDW----------------------------DDEMD----------GEWEPPMIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYVPDDKLYLRKEICTLGFDLWQVKSGTIFD 328          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNF 330          
The following BLAST results are available for this feature:
BLAST of FC875383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALX_HUMAN2.396e-5345.81Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CLGN_MOUSE4.377e-4743.81Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_HUMAN4.839e-4642.92Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CALX_SCHPO2.033e-4441.42Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CLGN_BOVIN7.726e-4442.48Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX_CAEEL1.969e-3939.29Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR_ONCVO4.709e-2533.64Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_EUGGR6.150e-2530.70Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_DROME6.150e-2533.82Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_RAT8.032e-2532.86Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31403C12EF CTVClemen1 Citrus clementina cDNA clone C31403C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875383 ID=FC875383; Name=FC875383; organism=Citrus clementina; type=EST; length=711bp
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAAGACTGGGATGAGGATGCTCCCATGGAAATTGAAGAT
GAGGATGCTGTGAAACCTGAAGGATGGCTGGATGATGACCCTGAGGAGAT
AGATGACCCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATG
GTGAATGGGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCT
GGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGG
CAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGTATTTGGA
AGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGAC
TTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGCAGGATGG
TATTTTGTTTGACACATTTTGATATCAAGGATGAGAAAGTGCAGAGTCTA
TCGGGCTCTGC
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