FC875383

Overview
NameFC875383
Unique NameFC875383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 78/236 (33.05%), Postives = 96/236 (40.68%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT +++PD    ILID  EKQ  +     D  PP                      KI DP+A KPEDWDE                D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNYKG WK   I NP++   D P+   +  +  VGIE+W ++ G LFD
Sbjct:  156 HLIKKEVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPP---------------------KKIKDPEAKKPEDWDEKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW--------------------------------DDEE------DGEWTAPTIANPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDF--KDDPEIYVYPNLKYVGIELWQVKSGTLFD 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 74/216 (34.26%), Postives = 94/216 (43.52%), Query Frame = 1
Query:   19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDK-PDFEPIAAVGIEIWTMQDGILFD 663
            +K      +D+LTHVYT ++KPDN  ++LID +E    +     D  PP                       I DP A KPEDWDE    EI D +  KPEGW            A KP                           G W+ PM  NP YKG+W A  I NP YKGIW    I NP+Y   DK  +F+ +  VG E+W ++ G +FD
Sbjct:  160 IKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPP---------------------KTIKDPKASKPEDWDERE--EIADPEDKKPEGW-DDIPATIADKDAKKPEDWDDEED-------------------GTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYVHDDKLYNFKDLKFVGFELWQVKSGSIFD 332          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 80/236 (33.90%), Postives = 95/236 (40.25%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT IL+PD    ILID  EKQ  +  +  D  PP                       I DP A KPEDWDE                D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNYKG WK   I NP++   D PD   F  +  VG+E+W ++ G LFD
Sbjct:  163 HLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP---------------------KTIKDPSAKKPEDWDEKEFIDDPEDKKPEGYDDIPEEITDPDAKKPEDW--------------------------------DDEE------DGEWTAPTIPNPEYKGPWKPKKIKNPNYKGKWKAPLIDNPDF--KDDPDLYVFPKLKYVGVELWQVKSGTLFD 337          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++P+N   + ID  + +  +     DF PP                      KI DPDA KPEDWD+ A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP YKGIW   +I NP Y     PD     +E  A +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDDRA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPEYKGIWIHPEIDNPEY----SPDSNIYAYENFAVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 77/236 (32.63%), Postives = 96/236 (40.68%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWD----------------EDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP---DFEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT I++PD    ILID EEK   +     D  PP                      KI DP+A KPEDWD                +D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNY+G WK   I NP++   D P    F+ +  +GIE+W ++ G LFD
Sbjct:  161 HLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPP---------------------KKIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW--------------------------------DDEE------DGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDF--KDDPYIYAFDSLKYIGIELWQVKSGTLFD 335          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 74/224 (33.04%), Postives = 95/224 (42.41%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDF-----EPIAAVGIEIWTMQDGILFDTF 669
            H +K       D  TH+YT I+KPDN   +LID E+ +  +  A  DF P                     +  IPDP+  KPEDWD+  P  I D DA KPE W                              ++D          GEW+ PM  NP YKG W    IDNP YKG W   +I NP Y     PD      + I AVG+++W ++ G +FD F
Sbjct:  155 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLP----NKKIKDPEAKKPEDWDDKPTIPDPEDKKPEDWDK--PEHIPDPDATKPEDW----------------------------DDEMD----------GEWEPPMIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY----TPDSNLYKRDEICAVGLDLWQVKSGTIFDDF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 69/213 (32.39%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNF 330          
The following BLAST results are available for this feature:
BLAST of FC875383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_MOUSE8.032e-2532.86Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_CRIGR8.032e-2532.86Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_RICCO1.049e-2433.05Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_CHLRE1.049e-2434.26Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_RABIT1.370e-2432.86Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_NICPL1.370e-2433.90Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_BOVIN1.370e-2432.86Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_MAIZE3.986e-2432.63Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_BOMMO3.986e-2433.04Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_MACFU5.206e-2432.39Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31403C12EF CTVClemen1 Citrus clementina cDNA clone C31403C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875383 ID=FC875383; Name=FC875383; organism=Citrus clementina; type=EST; length=711bp
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAAGACTGGGATGAGGATGCTCCCATGGAAATTGAAGAT
GAGGATGCTGTGAAACCTGAAGGATGGCTGGATGATGACCCTGAGGAGAT
AGATGACCCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATG
GTGAATGGGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCT
GGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGG
CAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGTATTTGGA
AGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGAC
TTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGCAGGATGG
TATTTTGTTTGACACATTTTGATATCAAGGATGAGAAAGTGCAGAGTCTA
TCGGGCTCTGC
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