FC875383

Overview
NameFC875383
Unique NameFC875383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 69/213 (32.39%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 69/213 (32.39%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 69/213 (32.39%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   46 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDTF 669
            D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FD F
Sbjct:  166 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNF 330          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 77/236 (32.63%), Postives = 96/236 (40.68%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWD----------------EDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT IL+PD    ILID +EKQ  +     D  P                       KI DP+A KPEDWD                +D P EI D +A KPE W                                D+ +       GEW  P   NP YKG W A  I NPNYKG WK   I NP +   D P+   +  +  VG+E+W ++ G LFD
Sbjct:  161 HLIKKDVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLP---------------------AKKIKDPEAKKPEDWDDKEFIPDPEDKKPEGYDDIPAEITDPEAKKPEDW--------------------------------DDEE------DGEWTAPTIPNPEYKGPWKAKKIKNPNYKGKWKAPMIDNPEF--KDDPELYVYPKLRYVGVELWQVKSGTLFD 335          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 75/220 (34.09%), Postives = 95/220 (43.18%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT IL+PD    ILID  EKQ  +     D  PP                    +  IPDP+  KPE +D D P EI D +A KPE W                                D+ +       GEW  P   NP YKG+W    I NPN+KG WK   I NP++   D PD   F  +  VGIE+W ++ G +FD
Sbjct:  158 HLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPP----KQIKDPEAKKPEDWEDKEYIPDPEDKKPEGYD-DIPKEITDPEAKKPEDW--------------------------------DDEE------DGEWTAPTIPNPDYKGEWKPKKIKNPNFKGKWKAPMIDNPDF--KDDPDIYVFPKLKYVGIELWQVKSGTMFD 332          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 76/220 (34.55%), Postives = 96/220 (43.64%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT IL+PD    ILID  EKQ  +  +  D  PP                      KI DP A KPEDWDE     I D +  KP+G+            + KP            AP I NP+       GEWK    +NP YKGKW AP IDNP++K                D P+   F  +  VG+E+W ++ G LFD
Sbjct:  158 HLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPP---------------------KKIKDPSAKKPEDWDEQE--YISDPEDKKPDGY-DDIPKEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEY-----MGEWKPKQIKNPNYKGKWEAPLIDNPDFK----------------DDPELYVFPKLKYVGLELWQVKSGSLFD 332          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 76/238 (31.93%), Postives = 96/238 (40.34%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWD----------------EDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP---DFEPIAAVGIEIWTMQDGILFDTF 669
            H +K      +D+L+HVYT I+ PD    ILID  EKQ  +     D  PP                      +I DP+A KPEDWD                +D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNY+G WK   I NP++   D P    F+ +  +GIE+W ++ G LFD F
Sbjct:  165 HLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPP---------------------KQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW--------------------------------DDEE------DGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDF--KDDPYIYAFDSLKYIGIELWQVKSGTLFDNF 341          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 78/236 (33.05%), Postives = 95/236 (40.25%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWD----------------EDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            H +K      +D+LTHVYT +L+PD    ILID  EKQ  +  +  D  P                       KI DP A KPEDWD                +D P EI D DA KPE W                            AP I NP+       GEWK    +NPAYKGKW AP IDNP +K                D P+   F  +  VG+E+W ++ G LFD
Sbjct:  158 HLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLP---------------------AKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIPKEIPDTDAKKPEDW-------------------DDEEDGEWTAPTIPNPEYN-----GEWKPKKIKNPAYKGKWKAPMIDNPEFK----------------DDPELYVFPKLKYVGVELWQVKSGSLFD 332          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 72/216 (33.33%), Postives = 92/216 (42.59%), Query Frame = 1
Query:   19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDK-PDFEPIAAVGIEIWTMQDGILFD 663
            +K   +  SD+LTH+YT IL  DN   + IDGE  Q  +     D  P                       KI DPDA KPEDWDE     I+D +  KPE W              KP             P    P+       GEW+ PM  NP YKG+W    I NP YKG W   +I NP Y   D+   +E   A+G ++W ++ G +FD
Sbjct:  152 IKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLP---------------------AKKIKDPDAKKPEDWDERE--YIDDAEDAKPEDW-------------EKPEHIPD--------PDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFD 323          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 73/216 (33.80%), Postives = 93/216 (43.06%), Query Frame = 1
Query:   19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFD 663
            +K   +  SD+LTH+YT IL  DN   + IDGE  Q  +     D  P                       KI DPDA KPEDWDE     I+D + VKPE W              KP             P    P+       GEW+ PM  NP YKG+W    I NP YKG W   +I NP Y   D+   +E   A+G ++W ++ G +FD
Sbjct:  152 IKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLP---------------------AKKIKDPDAKKPEDWDERE--YIDDAEDVKPEDW-------------EKPEHIPD--------PDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYLYENWGAIGFDLWQVKSGTIFD 323          
The following BLAST results are available for this feature:
BLAST of FC875383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_MACFA5.206e-2432.39Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]
CALR_HUMAN5.206e-2432.39Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CERAE5.206e-2432.39Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_BETVU5.206e-2432.63Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_BERST6.799e-2434.09Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR2_ARATH1.160e-2334.55Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_ORYSJ1.515e-2331.93Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR1_ARATH2.584e-2333.05Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_CAEEL7.518e-2333.33Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_CAEBR7.518e-2333.80Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]

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Properties
Property NameValue
Genbank descriptionC31403C12EF CTVClemen1 Citrus clementina cDNA clone C31403C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875383 ID=FC875383; Name=FC875383; organism=Citrus clementina; type=EST; length=711bp
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAAGACTGGGATGAGGATGCTCCCATGGAAATTGAAGAT
GAGGATGCTGTGAAACCTGAAGGATGGCTGGATGATGACCCTGAGGAGAT
AGATGACCCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATG
GTGAATGGGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCT
GGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGG
CAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGTATTTGGA
AGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGAC
TTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGCAGGATGG
TATTTTGTTTGACACATTTTGATATCAAGGATGAGAAAGTGCAGAGTCTA
TCGGGCTCTGC
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