FC875383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22 Identity = 73/215 (33.95%), Postives = 94/215 (43.72%), Query Frame = 1 Query: 19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663 +K +D+LTHVYT I++PD ILID EKQ + + D P KI DP+A KPEDW++ I D + KPEG+ A KP AP I NP+ + GEWK +NP +KGKW AP IDNP +K + PN Y VGIE+W ++ G LFD Sbjct: 162 IKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLP---------------------AKKIKDPEAKKPEDWEDQE--YIPDPEDKKPEGY-DDIPKEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYK-----GEWKPKKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKY-------------VGIELWQVKSGTLFD 334
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21 Identity = 66/218 (30.28%), Postives = 91/218 (41.74%), Query Frame = 1 Query: 13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNY-FELDKPDFEPIAAVGIEIWTMQDGILFD 663 H +K D TH+YT I+ P+N+ +L+D + ++ + D PP KI DP+ KP+DW ++ I+D D KP+ W A KP GEW+RP K NP YKG+W IDNP YKG WKP QI NP Y + + I VG ++W + G +FD Sbjct: 153 HLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPP---------------------KKIDDPNDKKPDDWVDE--QFIDDPDDKKPDNW--DQPKTIPDMDAKKPDDWDDAMD-------------------GEWERPQKDNPEYKGEWTPRRIDNPKYKGEWKPVQIDNPEYKHDPELYVLNDIGYVGFDLWQVDSGSIFD 326
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21 Identity = 70/221 (31.67%), Postives = 99/221 (44.80%), Query Frame = 1 Query: 10 EHHL--KNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFD 663 ++HL K V +D+LTH YT ++ PDN ++L+D +E Q N ADD++ L+ +I DP+ VKP D D P I D +AVKPE W N + + GEW+ P NP YKG+W A I NP YKG W I NP Y E ++ F + A+G E+W ++ G +F+ Sbjct: 152 KNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNL--ADDWE--LLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHD-DIPASIVDPEAVKPEDW---------------------------------NEEDD-----GEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFN 329
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_YEAST (Calnexin homolog OS=Saccharomyces cerevisiae GN=CNE1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20 Identity = 73/233 (31.33%), Postives = 95/233 (40.77%), Query Frame = 1 Query: 10 EHHLKNPPSVPSDKLT-----HVYTAILKPDNE-LRILIDG---------EEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP--DFEPIAAVGIEIWTMQDGIL 657 E L+ +P KLT H+YT I+ + +ILIDG E+K+K NF +PP+ R +IPDP+AVK D DE P+ I D +P W A KP P I NP C A GCG+ + N YKG I NPNY G W P +I NP Y+E P I+ V +E W+ +L Sbjct: 181 ESKLRYLQEMPLSKLTDTSQSHLYTLIIDESAQSFQILIDGKTVMVREHIEDKKKVNF------EPPITPPLMIPDVSVAKPHDWDDRIRIPDPEAVKLSDRDERDPLMIPHPDGTEPPEWNSSIPEYILDPNAQKPSWWKELEHGEWIPPMIKNPLCTAERGCGQQIPGLINNAKYKGPGELNEIINPNYMGEWHPPEIENPLYYEEQHPLRIENVISGVILEFWSGSPNML 407
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17 Identity = 65/218 (29.82%), Postives = 89/218 (40.83%), Query Frame = 1 Query: 19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663 +K +DKL H YT IL+PD +L+D +E++ + D PP KI +A KPEDWD+ I+D + VKPEG+ A +P PKI N + G WK +NP YKGKW P IDNP ++ D PD + I GIE+W ++ G +FD Sbjct: 166 IKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPP---------------------RKIKVKNAKKPEDWDDRE--YIDDPNDVKPEGF-DSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYK-----GPWKAKRIKNPNYKGKWKNPWIDNPEFE----------------DDPDLYVLKSIKYAGIEVWQVKAGSIFD 338 The following BLAST results are available for this feature:
BLAST of FC875383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875383 ID=FC875383; Name=FC875383; organism=Citrus clementina; type=EST; length=711bpback to top |