FC875383

Overview
NameFC875383
Unique NameFC875383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig509 contig Ccv1_Contig509:557..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 73/215 (33.95%), Postives = 94/215 (43.72%), Query Frame = 1
Query:   19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            +K      +D+LTHVYT I++PD    ILID  EKQ  +  +  D  P                       KI DP+A KPEDW++     I D +  KPEG+            A KP            AP I NP+ +     GEWK    +NP +KGKW AP IDNP +K   +    PN  Y             VGIE+W ++ G LFD
Sbjct:  162 IKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLP---------------------AKKIKDPEAKKPEDWEDQE--YIPDPEDKKPEGY-DDIPKEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYK-----GEWKPKKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKY-------------VGIELWQVKSGTLFD 334          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 66/218 (30.28%), Postives = 91/218 (41.74%), Query Frame = 1
Query:   13 HHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNY-FELDKPDFEPIAAVGIEIWTMQDGILFD 663
            H +K       D  TH+YT I+ P+N+  +L+D  + ++ +     D  PP                      KI DP+  KP+DW ++    I+D D  KP+ W            A KP                           GEW+RP K NP YKG+W    IDNP YKG WKP QI NP Y  + +      I  VG ++W +  G +FD
Sbjct:  153 HLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPP---------------------KKIDDPNDKKPDDWVDE--QFIDDPDDKKPDNW--DQPKTIPDMDAKKPDDWDDAMD-------------------GEWERPQKDNPEYKGEWTPRRIDNPKYKGEWKPVQIDNPEYKHDPELYVLNDIGYVGFDLWQVDSGSIFD 326          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 70/221 (31.67%), Postives = 99/221 (44.80%), Query Frame = 1
Query:   10 EHHL--KNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFD 663
            ++HL  K    V +D+LTH YT ++ PDN  ++L+D +E Q  N   ADD++  L+                    +I DP+ VKP   D D P  I D +AVKPE W                                 N + +     GEW+ P   NP YKG+W A  I NP YKG W    I NP Y E ++   F  + A+G E+W ++ G +F+
Sbjct:  152 KNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNL--ADDWE--LLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHD-DIPASIVDPEAVKPEDW---------------------------------NEEDD-----GEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFN 329          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_YEAST (Calnexin homolog OS=Saccharomyces cerevisiae GN=CNE1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 73/233 (31.33%), Postives = 95/233 (40.77%), Query Frame = 1
Query:   10 EHHLKNPPSVPSDKLT-----HVYTAILKPDNE-LRILIDG---------EEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP--DFEPIAAVGIEIWTMQDGIL 657
            E  L+    +P  KLT     H+YT I+    +  +ILIDG         E+K+K NF      +PP+                   R +IPDP+AVK  D DE  P+ I   D  +P  W            A KP             P I NP C A  GCG+    +  N  YKG      I NPNY G W P +I NP Y+E   P      I+ V +E W+    +L
Sbjct:  181 ESKLRYLQEMPLSKLTDTSQSHLYTLIIDESAQSFQILIDGKTVMVREHIEDKKKVNF------EPPITPPLMIPDVSVAKPHDWDDRIRIPDPEAVKLSDRDERDPLMIPHPDGTEPPEWNSSIPEYILDPNAQKPSWWKELEHGEWIPPMIKNPLCTAERGCGQQIPGLINNAKYKGPGELNEIINPNYMGEWHPPEIENPLYYEEQHPLRIENVISGVILEFWSGSPNML 407          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 65/218 (29.82%), Postives = 89/218 (40.83%), Query Frame = 1
Query:   19 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFD 663
            +K      +DKL H YT IL+PD    +L+D +E++  +     D  PP                      KI   +A KPEDWD+     I+D + VKPEG+            A +P             PKI N   +     G WK    +NP YKGKW  P IDNP ++                D PD    + I   GIE+W ++ G +FD
Sbjct:  166 IKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPP---------------------RKIKVKNAKKPEDWDDRE--YIDDPNDVKPEGF-DSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYK-----GPWKAKRIKNPNYKGKWKNPWIDNPEFE----------------DDPDLYVLKSIKYAGIEVWQVKAGSIFD 338          
The following BLAST results are available for this feature:
BLAST of FC875383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_PRUAR6.364e-2233.95Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_SCHMA1.852e-2130.28Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_DICDI5.388e-2131.67Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALX_YEAST2.047e-2031.33Calnexin homolog OS=Saccharomyces cerevisiae GN=CN... [more]
CALR3_ARATH6.164e-1729.82Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31403C12EF CTVClemen1 Citrus clementina cDNA clone C31403C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875383 ID=FC875383; Name=FC875383; organism=Citrus clementina; type=EST; length=711bp
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAAGACTGGGATGAGGATGCTCCCATGGAAATTGAAGAT
GAGGATGCTGTGAAACCTGAAGGATGGCTGGATGATGACCCTGAGGAGAT
AGATGACCCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATG
GTGAATGGGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCT
GGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGG
CAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGTATTTGGA
AGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGAC
TTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGCAGGATGG
TATTTTGTTTGACACATTTTGATATCAAGGATGAGAAAGTGCAGAGTCTA
TCGGGCTCTGC
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