FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3995 contig Ccv1_Contig3995:58..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 89/184 (48.37%), Postives = 124/184 (67.39%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSH-----SHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHL 633
            FL KT+D+VDD + D ++SW     SFVVW+P EFAR++LP  FKHNNFSSF+RQLNTYGFRKID +KWEF+N+ F++ K+HLLKNIHRR+   S+     S  Q+QGS  +        ++E+L  E+ AL   +V L+QQ       ++ + QR+ + +QRQ+ LL+FL K  QN  F++ L
Sbjct:   56 FLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTE-----VGGEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGFLERL 234          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 87/192 (45.31%), Postives = 126/192 (65.62%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSS------VDPERATFE-------EQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHL 633
            FL KTY++VDD  TD ++SW    NSFVVW+   FA +LLP YFKH+NFSSF+RQLNTYGFRK+DP++WEF+N+ F++ K+ LLK I RR+P  S S P +  SS        P  A  E         + RL  +KS L A +V+L+Q++ T + Q++ + +RI + +Q+Q+ +  FL +A++NP F+  L
Sbjct:   54 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPS-SPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEERISAAEQKQQQMTVFLARAMKNPGFLQML 244          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.356e-42
Identity = 84/182 (46.15%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL KTY++V+DSST+ IVSWS + NSF+VW P  FA + LP  FKHNNFSSF+RQLNTYGF+KID E+WEF+N+ F+K +RHLLKNI RRK   + S  QTQ         + E ++  L  ++ ALE  +VRL++++ + K  L  + +++   + +QE ++ FL K ++ P+F+  L ++
Sbjct:   20 FLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRK---TSSQTQTQ---------SLEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFLQSLRKR 189          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 85/195 (43.59%), Postives = 124/195 (63.59%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMDISAYNKKR 681
            FL KTYD+V +   D ++SW    NSFVVW+P  FAR +LP +FKHNNFSSF+RQLNTYGFRK+  ++WEF+++DF++  +HLLK I RR+   +       GSS +   +  + ++  L  EKSAL   + RLKQ+      Q+  L QR++S + RQ+ +++FL K +QNPTF+  L    +  +I +   KR
Sbjct:   68 FLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQSGLQPGSSGE---SGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLESAEDRQKQMVSFLAKLLQNPTFLRQLKMHRQQKEIDSTRVKR 259          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.362e-41
Identity = 82/182 (45.05%), Postives = 118/182 (64.84%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL KT++MVDD +TD IVSW+    SFVVW+   F+ +LLP +FKH+NFSSFIRQLNTYGFRKI+ E+WEF+N++F+  +R LLKNI RR P    S P               +    L  EK  L   IV L+QQ+ T K  ++ + QRI+  +++Q  +++FL +A+Q+P+F+  L ++
Sbjct:   30 FLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPS-------------HDACNELRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLARAMQSPSFLHQLLKQ 198          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.362e-41
Identity = 83/183 (45.36%), Postives = 124/183 (67.76%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDN-KNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL+KT++MV+D +TD +VSW    +NSFVVW+P  FA  LLP +FKH NFSSF+RQLNTYGFRK+  ++WEF+N+DF+  +RHLL NI RR+         T   +V+      E ++ERL  +K AL   + RL++Q+  A+ QL D+ +R+   ++RQE    FL +A+++P  +D++AR+
Sbjct:   44 FLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRR--RGAGTGSTTPRAVNCGGGGGEGEVERLRRDKEALARELARLRRQQQEARAQLLDMERRVRGTERRQEQCTEFLARALRSPDVLDNIARR 224          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 76/182 (41.76%), Postives = 119/182 (65.38%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL KT+++VDD  TD +VSWS  + SF++W+  EF+  LLP YFKH NFSSFIRQLN+YGF+K+D ++WEF+N+ F   K+HLLKNI RR          T+  + +    T E ++E L  E+S +   +++LKQQ+  ++ Q+  + ++I  +D  Q+++L+F  K  ++  FV+ L +K
Sbjct:   72 FLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRS-------KNTKCCNKEASTTTTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAKDQRFVERLVKK 246          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 78/179 (43.58%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHL 633
            FL KT++MV D +T+ IVSW+    SFVVW+P  F+  +LP YFKHNNFSSF+RQLNTYGFRKI+ E+WEF N+ F+  +R LLK+I RR    S S P    S   PE      ++ +L  E+  L   I  L+Q+   A+  ++ + QRI+  +++Q ++++FL++AV+NP+ +  +
Sbjct:   29 FLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRR--TSSSSPPSLNYSQSQPEAHDPGVELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVENPSLLQQI 205          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 75/192 (39.06%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERAT----------FEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL K YDMV D +TD ++SW++   SFV+W+   F R L   +FKH+NF+SFIRQLNTYGFRK+ P++WE++N+ F+  ++HLLK I RRK     S  + Q + V     T           E+++E L  +K+ L   +V L+  + T+ L++++L +R+  M+Q Q+ ++  L   VQNP+F++ L ++
Sbjct:   51 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFERDL-HRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQESPSEIQKAPVKTAPGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLRHYQQTSNLEVQNLIERLQVMEQNQQQMMALLAIVVQNPSFLNQLVQQ 241          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.519e-37
Identity = 76/187 (40.64%), Postives = 121/187 (64.71%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNK-NSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVD--PERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIE 648
            FL K YDMVDDS+TD I+SWS +  NSFV+ +   F+  LLP YFKH+NFSSFIRQLN YGFRK+D ++WEF+ND FV+ ++ LLKN+ RRK + S    + + +S     E++   ++++ L  +K  L   +++++Q +     ++  L  R+  M++ Q+ +L+FL   ++NP+ +  L +  E
Sbjct:   20 FLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQEKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKNPSLLVQLLQPKE 206          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSFA3_ARATH4.661e-4348.37Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFA2A_ORYSJ7.950e-4345.31Heat stress transcription factor A-2a OS=Oryza sat... [more]
HFA6A_ARATH1.356e-4246.15Heat stress transcription factor A-6a OS=Arabidops... [more]
HSFA3_ORYSJ8.790e-4243.59Heat stress transcription factor A-3 OS=Oryza sati... [more]
HFA7A_ARATH4.362e-4145.05Heat stress transcription factor A-7a OS=Arabidops... [more]
HFA6A_ORYSJ4.362e-4145.36Putative heat stress transcription factor A-6a OS=... [more]
HSFA9_ARATH1.833e-3941.76Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFA7B_ARATH2.647e-3843.58Heat stress transcription factor A-7b OS=Arabidops... [more]
HSFA9_ORYSJ3.822e-3739.06Heat stress transcription factor A-9 OS=Oryza sati... [more]
HSFA8_ARATH6.519e-3740.64Heat stress transcription factor A-8 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
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