FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACSU (Adenylate kinase OS=Bacillus subtilis GN=adk PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V +G PG GKGT   R+    G+PHI+TGD+ R  +    PL  +    + +G+LV DE+ I ++ +RL  G+   E GF+LDGFPRTV QAE LE + +     ID VIN+++ ++ L+
Sbjct:    4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_BOVIN (Adenylate kinase 2, mitochondrial OS=Bos taurus GN=AK2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V+ V LG PG GKGT A +L+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K LE    K   GF+LDGFPRTVRQAE+L+ + +     +D VI   + +  L+
Sbjct:   18 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 138          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THESQ (Adenylate kinase OS=Thermotoga sp. (strain RQ2) GN=adk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.496e-19
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE 601
            VFLG PG GKGTYA RL  + G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+
Sbjct:    6 VFLGPPGAGKGTYAKRLQEITGIPHISTGDIFRDIVKKENDELGKKIKEIMERGELVPDELVNEVVKRRL--SEKDCERGFILDGYPRTVAQAEFLD 100          

HSP 2 Score: 20.7866 bits (42), Expect = 1.496e-19
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++IC +CG  YN+
Sbjct:  126 RLTARRICPKCGRIYNL 142          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THEP1 (Adenylate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=adk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.496e-19
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE 601
            VFLG PG GKGTYA RL  + G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+
Sbjct:    6 VFLGPPGAGKGTYAKRLQEITGIPHISTGDIFRDIVKKENDELGKKIKEIMERGELVPDELVNEVVKRRL--SEKDCERGFILDGYPRTVAQAEFLD 100          

HSP 2 Score: 20.7866 bits (42), Expect = 1.496e-19
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++IC +CG  YN+
Sbjct:  126 RLTARRICPKCGRIYNL 142          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_KOSOT (Adenylate kinase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=adk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A +++   G+PHI+TGD++R+ +A+   L  ++ EI+ +G LV D++++ ++  RL+  ++    GFILDGFPRTV+QAE L G+      ++D VI +   EE ++   S
Sbjct:    4 ILLGPPGAGKGTQAKKIAMRYGIPHISTGDMLREAVAAGTELGKKVKEIIEKGLLVPDDLMVAIVEDRLKKPDS--AKGFILDGFPRTVQQAESLSGILGNLGKELDAVILIDAPEEVVVERIS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_COREF (Adenylate kinase OS=Corynebacterium efficiens GN=adk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A+ LS  LG+PHI+TGDL R  +    PL  +  + +  GKLV  ++   ++  RL   EA    GF+LDGFPRTV QA+IL  + D     +D VIN ++ E+ ++
Sbjct:    4 VLLGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVQSRL--AEADAAEGFLLDGFPRTVEQADILADLLDKAGNPLDGVINYQVSEDVVV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_SALSA (Adenylate kinase 2, mitochondrial OS=Salmo salar GN=ak2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ + LG PG GKGT A RL+    V H+ATGD++R  +AS   L  +L E +  GKLVSDE+++ L+ K L+    K   GF+LDGFPRTV+QAE+L+ + +     +D VI   + +  L+
Sbjct:   18 IRAILLGPPGAGKGTQAPRLAEQYCVCHLATGDMLRAMVASGSGLGKRLKETMDAGKLVSDEMVVELIEKNLDTPPCK--KGFLLDGFPRTVKQAEMLDDLLEKRTEKLDSVIEFSVDDSLLV 138          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_GEOSW (Adenylate kinase OS=Geobacillus sp. (strain WCH70) GN=adk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V +G PG GKGT A ++    G+PHI+TGD+ R  +    PL  Q  E + +G LV DE+ I ++ +RL   +   + GF+LDGFPRTV QAE LE +       ID VI++++ ++ L+
Sbjct:    4 VLMGLPGAGKGTQAEKIVETYGIPHISTGDMFRAAIKEGTPLGLQAKEYMDRGDLVPDEVTIGIVRERLSKDDC--QKGFLLDGFPRTVAQAEALENILAELNRSIDYVIHIQVDKDILM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BEII9 (Adenylate kinase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=adk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALLA 661
            + LG PG GKGT + RL     +P ++TGD++R  + +  P+  +   ++  G LVSD+I++ +++ R+E  +A+   GFILDGFPRTV+QAE L     E   D+D VI L + E ALLA
Sbjct:    4 ILLGPPGAGKGTQSERLREQCKIPQLSTGDMLRAAVKAGTPIGLKAKAVMDAGGLVSDDIVVGIVADRIEEPDARN--GFILDGFPRTVKQAEALTTMLHEKKMDLDAVIELVVDENALLA 122          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOPE (Adenylate kinase OS=Clostridium perfringens GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.292e-19
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALL 658
            V+ V LG PG GKGT A  +SN   +PHI+TGD+ R  ++ + PL  +    +  G+LV DE+ IN++  RL+  + K   G++LDGFPRTV QAE L     E    ID  + +++ +E +L
Sbjct:    3 VKIVLLGPPGAGKGTQAKSISNRYSIPHISTGDIFRKNISENTPLGIEAKSYMDNGQLVPDEVTINMVKDRLQQDDCKN--GYLLDGFPRTVHQAEALDNFLTEREESIDTALLIEVPKEFIL 123          

HSP 2 Score: 21.9422 bits (45), Expect = 3.292e-19
Identity = 5/17 (29.41%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  +++C  CG +Y++
Sbjct:  125 RMTGRRVCPSCGASYHI 141          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BACSU1.359e-1941.67Adenylate kinase OS=Bacillus subtilis GN=adk PE=1 ... [more]
KAD2_BOVIN1.359e-1943.90Adenylate kinase 2, mitochondrial OS=Bos taurus GN... [more]
KAD_THESQ1.496e-1950.52Adenylate kinase OS=Thermotoga sp. (strain RQ2) GN... [more]
KAD_THEP11.496e-1950.52Adenylate kinase OS=Thermotoga petrophila (strain ... [more]
KAD_KOSOT1.775e-1939.52Adenylate kinase OS=Kosmotoga olearia (strain TBF ... [more]
KAD_COREF2.319e-1943.33Adenylate kinase OS=Corynebacterium efficiens GN=a... [more]
KAD2_SALSA2.319e-1942.28Adenylate kinase 2, mitochondrial OS=Salmo salar G... [more]
KAD_GEOSW3.028e-1940.83Adenylate kinase OS=Geobacillus sp. (strain WCH70)... [more]
KAD_BEII93.028e-1942.15Adenylate kinase OS=Beijerinckia indica subsp. ind... [more]
KAD_CLOPE3.292e-1940.65Adenylate kinase OS=Clostridium perfringens GN=adk... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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