FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOPS (Adenylate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=adk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.571e-19
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALL 658
            V LG PG GKGT A  +SN   +PHI+TGD+ R  ++ + PL  +    +  G+LV DE+ IN++  RL+  + K   G++LDGFPRTV QAE L     E    ID  + +++ +E +L
Sbjct:    4 VLLGPPGAGKGTQAKSISNRYSIPHISTGDIFRKNISENTPLGIEAKSYMDNGQLVPDEVTINMVKDRLQQDDCKN--GYLLDGFPRTVHQAEALDNFLTEREESIDTALLIEVPKEFIL 121          

HSP 2 Score: 21.9422 bits (45), Expect = 5.571e-19
Identity = 5/17 (29.41%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  +++C  CG +Y++
Sbjct:  123 RMTGRRVCPSCGASYHI 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOP1 (Adenylate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=adk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.571e-19
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALL 658
            V LG PG GKGT A  +SN   +PHI+TGD+ R  ++ + PL  +    +  G+LV DE+ IN++  RL+  + K   G++LDGFPRTV QAE L     E    ID  + +++ +E +L
Sbjct:    4 VLLGPPGAGKGTQAKSISNRYSIPHISTGDIFRKNISENTPLGIEAKSYMDNGQLVPDEVTINMVKDRLQQDDCKN--GYLLDGFPRTVHQAEALDNFLTEREESIDTALLIEVPKEFIL 121          

HSP 2 Score: 21.9422 bits (45), Expect = 5.571e-19
Identity = 5/17 (29.41%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  +++C  CG +Y++
Sbjct:  123 RMTGRRVCPSCGASYHI 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CYAP4 (Adenylate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=adk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEAL 655
            +  G PG GKGT A  L +LL +PHI+TGD+ R  + +  PL  Q+   +  G+LV DE+ INL+ +RL   +   + G+ILDGFPRT+ QAE LE +        D V++L + EE L
Sbjct:    5 ILFGPPGAGKGTQAKHLVDLLDIPHISTGDIFRAAVRNQTPLGQQVQAYLDSGRLVPDELTINLIQERLHQSDV--QKGWILDGFPRTLAQAEALEKLLHQINQPYDRVLSLTVPEEVL 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_XENLA (Adenylate kinase 2, mitochondrial OS=Xenopus laevis GN=ak2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ + LG PG GKGT A +L+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K L+    K   GF+LDGFPRTV+QAE+L+ + +     +D VI  K+ +  L+
Sbjct:   18 IRAILLGPPGAGKGTQAPKLAEKYCVCHLATGDMLRAMVASGSELGKRLKATMDAGKLVSDEMVVELIEKNLDTPPCK--KGFLLDGFPRTVKQAEMLDELLEKRQEKLDSVIEFKVDDSLLV 138          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_ANOGA (Adenylate kinase 2, mitochondrial OS=Anopheles gambiae GN=Adk2 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + LG PG GKGT A  L     V H++TGD++R E+AS   L +QL +++ +GKLVSDE++++++   L+  E +   GF+LDGFPRTV QAE L+ +     T +D VI   + +  L+
Sbjct:   22 ILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEIASGSKLGAQLKKVMDEGKLVSDELVVDMIDSNLDKPECRN--GFLLDGFPRTVVQAEKLDNLLEKRNTGLDAVIEFGIDDSLLV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD1_SYNY3 (Adenylate kinase 1 OS=Synechocystis sp. (strain PCC 6803) GN=adk1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVT-----DIDLVINLKLREEALL 658
            +FLG PG GKGT A  L+  LG+PHI+TGD++R  +A    L +Q    + +G+LV D++I+ L+ +RL  G    +AG+ILDGFPR V QA  L+ +          VINLK+ +E ++
Sbjct:    6 IFLGAPGSGKGTQAVGLAETLGIPHISTGDMLRQAIADGTELGNQAKGYMDKGELVPDQLILGLIEERL--GHKDAKAGWILDGFPRNVNQAIFLDELLVNIGHRTHWVINLKVPDEVIV 123          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THENN (Adenylate kinase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.241e-19
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE 601
            VFLG PG GKGTYA R+    G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+
Sbjct:    6 VFLGPPGAGKGTYAKRIQEKTGIPHISTGDIFRDIVKKENDELGKKIKEIMEKGELVPDELVNEVVKRRL--SEKDCEKGFILDGYPRTVAQAEFLD 100          

HSP 2 Score: 20.7866 bits (42), Expect = 7.241e-19
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++IC +CG  YN+
Sbjct:  126 RLTSRRICPKCGRIYNM 142          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THENE (Adenylate kinase OS=Thermotoga neapolitana GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.241e-19
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE 601
            VFLG PG GKGTYA R+    G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+
Sbjct:    6 VFLGPPGAGKGTYAKRIQEKTGIPHISTGDIFRDIVKKENDELGKKIKEIMEKGELVPDELVNEVVKRRL--SEKDCEKGFILDGYPRTVAQAEFLD 100          

HSP 2 Score: 20.7866 bits (42), Expect = 7.241e-19
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++IC +CG  YN+
Sbjct:  126 RLTSRRICPKCGRIYNM 142          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOK5 (Adenylate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=adk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.244e-19
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEAL 655
            + LG PG GKGT A  +S    +PHI+TGD+ R  ++   PL  +  E + +G+LV DE+ IN++  RL   +   E+GF+LDGFPRTV QAE L+   +     ID+V+ + +  E +
Sbjct:    4 ILLGPPGAGKGTQAKFISEEYSIPHISTGDIFRKNISDKTPLGIEAKEYLDKGQLVPDEVTINIVKDRLSEDDC--ESGFLLDGFPRTVYQAEALDSFLNANDNKIDMVLLIDVPRELI 120          

HSP 2 Score: 22.7126 bits (47), Expect = 7.244e-19
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  ++IC  CG +Y+V
Sbjct:  123 RMTGRRICPSCGASYHV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOK1 (Adenylate kinase OS=Clostridium kluyveri (strain NBRC 12016) GN=adk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.244e-19
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEAL 655
            + LG PG GKGT A  +S    +PHI+TGD+ R  ++   PL  +  E + +G+LV DE+ IN++  RL   +   E+GF+LDGFPRTV QAE L+   +     ID+V+ + +  E +
Sbjct:    4 ILLGPPGAGKGTQAKFISEEYSIPHISTGDIFRKNISDKTPLGIEAKEYLDKGQLVPDEVTINIVKDRLSEDDC--ESGFLLDGFPRTVYQAEALDSFLNANDNKIDMVLLIDVPRELI 120          

HSP 2 Score: 22.7126 bits (47), Expect = 7.244e-19
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  ++IC  CG +Y+V
Sbjct:  123 RMTGRRICPSCGASYHV 139          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_CLOPS5.571e-1940.83Adenylate kinase OS=Clostridium perfringens (strai... [more]
KAD_CLOP15.571e-1940.83Adenylate kinase OS=Clostridium perfringens (strai... [more]
KAD_CYAP46.746e-1942.86Adenylate kinase OS=Cyanothece sp. (strain PCC 742... [more]
KAD2_XENLA6.746e-1941.46Adenylate kinase 2, mitochondrial OS=Xenopus laevi... [more]
KAD2_ANOGA6.746e-1941.67Adenylate kinase 2, mitochondrial OS=Anopheles gam... [more]
KAD1_SYNY36.746e-1942.50Adenylate kinase 1 OS=Synechocystis sp. (strain PC... [more]
KAD_THENN7.241e-1949.48Adenylate kinase OS=Thermotoga neapolitana (strain... [more]
KAD_THENE7.241e-1949.48Adenylate kinase OS=Thermotoga neapolitana GN=adk ... [more]
KAD_CLOK57.244e-1940.34Adenylate kinase OS=Clostridium kluyveri (strain A... [more]
KAD_CLOK17.244e-1940.34Adenylate kinase OS=Clostridium kluyveri (strain N... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
back to top