FC875392 | Citrus Genome Database

Overview


Name	FC875392
Unique Name	FC875392
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	721

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC875392_ssr35	microsatellite	FC875392_ssr35:35..52.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55	microsatellite	FC875392_ssr55:55..68.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253	microsatellite	FC875392_ssr253:253..264.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218	contig	Ccv1_Contig13218:52..775.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PROVI (Adenylate kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 47/121 (38.84%), Postives = 79/121 (65.29%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL--EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT +  +S  LG+P I+TGD++R  +    PL  +  E++  G LVSD+II++++ +RL+  + +  +G + DGFPRT+ QAE L  EG+T I+ VI +++ + +++   S
Sbjct:    4 ILLGAPGAGKGTQSHFISKALGIPQISTGDMLRAAVKEETPLGRKAKEVMDSGNLVSDDIILDIIKERLKEDDCR--SGCLFDGFPRTIAQAEALDREGIT-INHVIEIRVEDSSIIQRMS 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_XENTR (Adenylate kinase 2, mitochondrial OS=Xenopus tropicalis GN=ak2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 2

Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ + LG PG GKGT A +L+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K L+    K   GF+LDGFPRTV+QAE+L+ + +     +D VI  K+ +  L+
Sbjct:   18 IRAILLGPPGAGKGTQAPKLAEKYCVCHLATGDMLRAMVASGSELGMRLKATMDAGKLVSDEMVVELIEKNLDTPPCK--KGFLLDGFPRTVKQAEMLDELLEKRQEKLDSVIEFKVDDSLLV 138

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STAAW (Adenylate kinase OS=Staphylococcus aureus (strain MW2) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELM 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STAAS (Adenylate kinase OS=Staphylococcus aureus (strain MSSA476) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELM 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STAAR (Adenylate kinase OS=Staphylococcus aureus (strain MRSA252) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELM 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STAAN (Adenylate kinase OS=Staphylococcus aureus (strain N315) GN=adk PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELM 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STAAM (Adenylate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adk PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELM 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STAAC (Adenylate kinase OS=Staphylococcus aureus (strain COL) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELM 121

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSEA6 (Adenylate kinase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALL 658
            + LG PG GKGT A  L    G+P I+TGD++R  + +   L +    ++ +GKLVSDE+II L+ +R+   + KG  GF+LDGFPRT+ QA+ + E   ++D VI   + +E ++
Sbjct:    4 ILLGAPGAGKGTQAQYLMGKYGIPQISTGDMLRAAIKAGTELGNAAKRVMDEGKLVSDELIIGLVKERIAQDDCKG--GFLLDGFPRTIPQADAMKEAGINVDHVIEFDVPDEVIV 117

[Close]

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_MARAV (Adenylate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL--EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  ++    +P I+TGD++R  + +   L  Q+ E+++ G LVSD+III L+ +R++  + K   GF+LDGFPRT+ QAE L  +G+  ID V+ + + +E +++  S
Sbjct:    4 IMLGAPGAGKGTQAQFITERFEIPQISTGDMLRAAVKAESELGLQVKEVMASGGLVSDDIIIALIEERIQQPDCKN--GFLLDGFPRTIPQAEALKDQGIA-IDYVVEISVEDEEIVSRLS 121

The following BLAST results are available for this feature:

BLAST of FC875392 vs. ExPASy Swiss-Prot

BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
KAD_PROVI	8.811e-19	38.84	Adenylate kinase OS=Prosthecochloris vibrioformis ...	[more]
KAD2_XENTR	8.811e-19	41.46	Adenylate kinase 2, mitochondrial OS=Xenopus tropi...	[more]
KAD_STAAW	1.151e-18	38.33	Adenylate kinase OS=Staphylococcus aureus (strain ...	[more]
KAD_STAAS	1.151e-18	38.33	Adenylate kinase OS=Staphylococcus aureus (strain ...	[more]
KAD_STAAR	1.151e-18	38.33	Adenylate kinase OS=Staphylococcus aureus (strain ...	[more]
KAD_STAAN	1.151e-18	38.33	Adenylate kinase OS=Staphylococcus aureus (strain ...	[more]
KAD_STAAM	1.151e-18	38.33	Adenylate kinase OS=Staphylococcus aureus (strain ...	[more]
KAD_STAAC	1.151e-18	38.33	Adenylate kinase OS=Staphylococcus aureus (strain ...	[more]
KAD_PSEA6	1.151e-18	40.52	Adenylate kinase OS=Pseudoalteromonas atlantica (s...	[more]
KAD_MARAV	1.151e-18	39.67	Adenylate kinase OS=Marinobacter aquaeolei (strain...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA