FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACST (Adenylate kinase OS=Bacillus stearothermophilus GN=adk PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V +G PG GKGT A ++    G+PHI+TGD+ R  +    PL  Q  + + +G LV DE+ I ++ +RL   + +   GF+LDGFPRTV QAE LE +       +D VI++ +R++ L+
Sbjct:    4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQN--GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACSK (Adenylate kinase OS=Bacillus clausii (strain KSM-K16) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++ N  G+PHI+TGD+ R  + +   L  +    +  G LV DE+ I ++ +RL   +   E GF+LDGFPRT+ QAE LEG+       +D V+N+ + +E L+
Sbjct:    4 ILMGLPGAGKGTQAEKIVNDYGIPHISTGDMFRAAMKNETELGLKAKSFIDAGDLVPDEVTIGIVKERLSEDDC--ENGFLLDGFPRTIAQAEALEGILSSLGKQLDHVLNIAVPKELLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROMO (Adenylate kinase 2, mitochondrial OS=Drosophila mojavensis GN=Adk2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V  + LG PG GKGT A  L     V H++TGD++R E+AS   L ++L +++ +GKLVSD+++++++   L+  E K   GF+LDGFPRTV QA+ L+ +     T +D VI   + +  L+
Sbjct:   19 VNAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASGSKLGAELKKVMDEGKLVSDDLVVDMIDSNLDKPECKN--GFLLDGFPRTVVQAQKLDSLLDKRKTSLDAVIEFAIDDNLLV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DANRE (Adenylate kinase 2, mitochondrial OS=Danio rerio GN=ak2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ + LG PG GKGT A +L+    V H+ATGD++R  +AS   L  +L E +  GKLVSDE+++ L+   L+    K   GF+LDGFPRTV+QAE+L+ + +     +D VI   + +  L+
Sbjct:   18 IRAILLGPPGAGKGTQAPKLAEKYCVCHLATGDMLRAMVASGSELGQRLKETMDAGKLVSDEMVVELIDNNLDTPACKN--GFLLDGFPRTVKQAEMLDDLMEKRSEKLDSVIEFSVDDSLLV 138          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD11_CANAL (Adenylate kinase 1-1 OS=Candida albicans GN=ADK1-1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 51/124 (41.13%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLA 661
            V+ V +G PG GKGT A  L       H+ATGD++R ++A+   L  +  +I+ QG LVSDEI++N++   LE  + +   GFILDGFPRT+ QAE L+ +     T ++  + LK+ +E L+A
Sbjct:   34 VRMVLIGPPGAGKGTQAPNLKEKFCACHLATGDMLRAQVAAKTALGVEAKKIMDQGGLVSDEIMVNMIKSELENNQ-ECSKGFILDGFPRTIPQAEKLDSMLESRKTPLEKAVELKIDDELLVA 156          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CORGL (Adenylate kinase OS=Corynebacterium glutamicum GN=adk PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALL 658
            V LG PG GKGT A+ LS  LG+PHI+TGDL R  +    PL  +  + +  GKLV  ++   +++ RL   E+    GF+LDGFPRTV QA+IL     E    +D V+N ++ E+ ++
Sbjct:    4 VLLGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVASRL--AESDAAEGFLLDGFPRTVEQADILANLLSEAGQTLDGVVNYQVSEDVVV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CORGB (Adenylate kinase OS=Corynebacterium glutamicum (strain R) GN=adk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALL 658
            V LG PG GKGT A+ LS  LG+PHI+TGDL R  +    PL  +  + +  GKLV  ++   +++ RL   E+    GF+LDGFPRTV QA+IL     E    +D V+N ++ E+ ++
Sbjct:    4 VLLGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVASRL--AESDAAEGFLLDGFPRTVEQADILANLLSEAGQTLDGVVNYQVSEDVVV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CORDI (Adenylate kinase OS=Corynebacterium diphtheriae GN=adk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLRE----EALLANASEED 679
            V LG PG GKGT A+ LS  L +PHI+TGDL R  +    PL  +    +  GKLV  ++   ++  RL+  +A  E GF+LDGFPRTV QAEIL+ +      +++ VIN ++ E    E +LA    +D
Sbjct:    4 VLLGPPGAGKGTQAAILSEKLRIPHISTGDLFRANIGEGTPLGKEAKSYIDAGKLVPTDVTARMVKARLQKDDA--EVGFLLDGFPRTVEQAEILKEMLKGFGVELNGVINYEVAEDVVVERMLARGRADD 132          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_ACICJ (Adenylate kinase OS=Acidiphilium cryptum (strain JF-5) GN=adk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 56/124 (45.16%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVT-----DIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  L +  GV  IATGD++R E+ +   L      ++  G LVSDEIII +L  RL   + +   GFILDGFPRTV QAE L+ +      D+D VI LK+ E  L+   S
Sbjct:    4 ILLGPPGAGKGTQAKILQDRYGVAQIATGDMLRAEVKAGTELGRAAKAVMESGALVSDEIIIGMLRNRLSQPDCRN--GFILDGFPRTVPQAEALDTMLAEQKFDLDAVILLKVDEAVLVERIS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROGR (Adenylate kinase 2, mitochondrial OS=Drosophila grimshawi GN=Adk2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V  + LG PG GKGT A  L     V H++TGD++R E+AS   L S L +++  GKLVSD+++++++   L+  E K   GF+LDGFPRTV QAE L+ + D     +D VI   + +  L+
Sbjct:   19 VNAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASGSKLGSDLKKVMDAGKLVSDDLVVDMIDSNLDKPECKN--GFLLDGFPRTVVQAEKLDTLLDKRKTHLDAVIEFAIDDNLLV 139          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BACST1.151e-1840.00Adenylate kinase OS=Bacillus stearothermophilus GN... [more]
KAD_BACSK1.151e-1839.17Adenylate kinase OS=Bacillus clausii (strain KSM-K... [more]
KAD2_DROMO1.151e-1839.84Adenylate kinase 2, mitochondrial OS=Drosophila mo... [more]
KAD2_DANRE1.151e-1840.65Adenylate kinase 2, mitochondrial OS=Danio rerio G... [more]
KAD11_CANAL1.151e-1841.13Adenylate kinase 1-1 OS=Candida albicans GN=ADK1-1... [more]
KAD_CORGL1.503e-1841.67Adenylate kinase OS=Corynebacterium glutamicum GN=... [more]
KAD_CORGB1.503e-1841.67Adenylate kinase OS=Corynebacterium glutamicum (st... [more]
KAD_CORDI1.503e-1841.22Adenylate kinase OS=Corynebacterium diphtheriae GN... [more]
KAD_ACICJ1.503e-1845.16Adenylate kinase OS=Acidiphilium cryptum (strain J... [more]
KAD2_DROGR1.503e-1841.46Adenylate kinase 2, mitochondrial OS=Drosophila gr... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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