FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRU0 (60 kDa chaperonin OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A+  AVE L+ IAQ
Sbjct:   10 DARAAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIEKATSAAVEELKAIAQ 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STAHJ (60 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA++A +     +A  ++ ++GPKG + +L        ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ + EG + A R+AV+ L  I+QK E
Sbjct:   10 DARQAMLRGVDKLANAVKVTIGPKGRNVVLDKEYVAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLREGIDKAVRVAVQALHDISQKVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PSYCK (60 kDa chaperonin OS=Psychrobacter cryohalolentis (strain K5) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 39/127 (30.71%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+DA+K  +     +A  +R +LGPKG + ++    G  TIT DG ++ ++++++N+     A+L+ E++   +   GDGTT   V+A S+L++  K +  G++P+ +  G + A R AVE +  ++
Sbjct:    8 GIDARKQMMDGVNVLANAVRVTLGPKGRNVVIDKSFGAPTITKDGVSVAKEIELENKFENMGAQLVREVASRTNDVAGDGTTTATVLAQSILQEGMKSVAAGMNPMDLKRGIDKAVRAAVEQIHLLS 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACPL (60 kDa chaperonin OS=Lactobacillus plantarum GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+ A +     +A  ++++LGPKG + +L+   G  TITNDG TI + +++D    N  AKL+ E++   +   GDGTT   V+  S++ +  K +  G +P+ I  G E A++ AV+ L  +A +
Sbjct:   10 DARSAMLKGVDQLADTVKSTLGPKGRNVVLEQSYGSPTITNDGVTIAKAIELDDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQSIVNEGMKNVTAGANPVGIRRGIEEATKTAVDSLHAMAHE 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   +   +S L+G+D           +A  ++T++GPKG + +L+   G+  ITNDG TI + +++    +N  AKL+ E ++  +   GDGTT   V+  +++ +  K +  G +P+ I  G E A++ AV+ L +I+ K E
Sbjct:    5 IKFSENARRSLLKGVDK----------LADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIELKDRYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACCN (60 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 45/144 (31.25%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+D           +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   AVE L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDT----------LANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVATAVEELKTISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_ANOFW (60 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ I +G E A  +AVE L+ I++  E
Sbjct:   10 EARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRA5 (60 kDa chaperonin OS=Streptococcus agalactiae serotype V GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+ IAQ
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIETAVSAAVEELKEIAQ 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRA3 (60 kDa chaperonin OS=Streptococcus agalactiae serotype III GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+ IAQ
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIETAVSAAVEELKEIAQ 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRA1 (60 kDa chaperonin OS=Streptococcus agalactiae serotype Ia GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+ IAQ
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIETAVSAAVEELKEIAQ 135          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_STRU03.243e-1335.7160 kDa chaperonin OS=Streptococcus uberis (strain ... [more]
CH60_STAHJ3.243e-1332.5660 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH60_PSYCK3.243e-1330.7160 kDa chaperonin OS=Psychrobacter cryohalolentis ... [more]
CH60_LACPL3.243e-1333.8660 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH60_LACH43.243e-1330.5660 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_BACCN3.243e-1331.2560 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH60_ANOFW3.243e-1332.5660 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH60_STRA54.236e-1335.7160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA34.236e-1335.7160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA14.236e-1335.7160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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