FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STAA1 (60 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 40/129 (31.01%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA++A +     +A  ++ ++GPKG + +L        ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ + +G + A ++AVE L   +QK E
Sbjct:   10 DARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACS1 (60 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 40/129 (31.01%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA+   +     +A  +++++GPKG + +L+   G  TITNDG TI +  D++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +P+ I  G E+A++ AV+ L  ++   E
Sbjct:   10 DARSKMLKGVDKLANTVKSTIGPKGRNVVLEQSYGSPTITNDGVTIAKATDLEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIELATKAAVDALHEMSHTVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  189 LDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            + A+ A +     VA  ++ +LGPKG + +L+   G   ITNDG TI +++D+    +N  A+L+ E++   +   GDGTT   V+A +L+ +  K +  G +P+ +  G E A    VE L++IA+  E
Sbjct:   10 MQARTALIKGLDTVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVKRGIEKAVEKVVEELKKIAKPVE 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORT9 (60 kDa chaperonin OS=Borrelia turicatae (strain 91E135) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 39/127 (30.71%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G  T+T DG ++  ++++DN +    A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G E A  +A E + + A+K
Sbjct:   10 DARKSLLSGIEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELDNALENMGAQLLKEVAIKTNDLAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIEHAVTLASEKIRKSAKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THEAB (60 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            +A++A      AVA  ++ +LGPKG + +++   G  TITNDG +I ++++++++     A+L+ E++   +   GDGTT   V+A +++++  K +  G +PI +  G E A    VE +++I++K
Sbjct:   10 EARRALERGVDAVADAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGIKNVTAGANPILVKRGIEKAVAAGVEEIKKISKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRMU (60 kDa chaperonin OS=Streptococcus mutans GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ + V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AV+ L+ IAQ
Sbjct:   10 DARSSMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIETAVATAVDELKAIAQ 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_ONYPE (60 kDa chaperonin OS=Onion yellows phytoplasma GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 40/136 (29.41%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            K  L G +A+KA +    A+A  ++ +LGPKG + +L+       I NDG +I +++++ N      AKL+ E++   + + GDGTT   V+A S++ +    ++ G +P+ + EG E+A+    + L   ++K +
Sbjct:    3 KKILYGKEARKALLQGVDAIANTVKVTLGPKGRNVILEKAYDSPAIVNDGVSIAKEIELKNPYQNMGAKLVYEVASKTNDKAGDGTTTATVLAQSMIHRGFDAIDAGANPVLVKEGIELAALTVAKKLLAKSKKVD 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_GARVA (60 kDa chaperonin OS=Gardnerella vaginalis GN=groL PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA++  ++    +A  ++ +LGPKG + +L    G  TITNDG +I +++D+++      A+L+ E+++  D   GDGTT   V+A SL+ +  K +  G +PI +  G E AS   V+ L   A+  E
Sbjct:   10 DARQGMLAGLDRLANTVKVTLGPKGRNVVLDKSYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKASEAIVKELLASAKDVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH604_BRAJA (60 kDa chaperonin 4 OS=Bradyrhizobium japonicum GN=groL4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 40/132 (30.30%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            K  L  ++A++A     + +A  + ++LGPKGM+ M+  P G   ++ DG TI  ++++    +N  A+++ E+S   +   GDGTT  +V+A  L++     LERG   + + +G + A  + VE L+  A
Sbjct:    3 KVLLHDIEARRALARGVQKLAAAIESTLGPKGMNAMVDRPIGTPIVSRDGVTIASEIELPDRFENMGAQVVREVSMQTNEVAGDGTTTAMVLANGLIQGGVAALERGAKAVDLCKGIDRAVEVVVESLKSAA 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_SACD2 (60 kDa chaperonin OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 38/133 (28.57%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG 572
            G +A++  ++    +A  ++T+LGPKG + +L    G  T+T DG ++ +++++    +N  A+++ E++     + GDGTT   V+A +++ +  K +  G++P+ +  G + A   AV H++ IAQ  E G
Sbjct:    8 GDEARQKMLAGVNVLADAVKTTLGPKGRNVVLDKSFGAPTVTKDGVSVAKEIELEDKFENMGAQMVKEVASKASDDAGDGTTTATVLAQAIVNEGLKSVAAGMNPMDLKRGIDKAVNAAVAHIKSIAQPCEDG 140          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_STAA12.102e-1231.0160 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_LACS12.102e-1231.0160 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH60_DICTD2.102e-1233.0860 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_BORT92.102e-1230.7160 kDa chaperonin OS=Borrelia turicatae (strain 91... [more]
CH60_THEAB2.745e-1230.7160 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH60_STRMU2.745e-1234.1360 kDa chaperonin OS=Streptococcus mutans GN=groL ... [more]
CH60_ONYPE2.745e-1229.4160 kDa chaperonin OS=Onion yellows phytoplasma GN=... [more]
CH60_GARVA2.745e-1233.3360 kDa chaperonin OS=Gardnerella vaginalis GN=groL... [more]
CH604_BRAJA2.745e-1230.3060 kDa chaperonin 4 OS=Bradyrhizobium japonicum GN... [more]
CH60_SACD23.586e-1228.5760 kDa chaperonin OS=Saccharophagus degradans (str... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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