FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 40/125 (32.00%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+   ++    +A  ++T+LGPKG + +L+   G+ TITNDG TI + +++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +P+ I  G E A+  AV+ L +++
Sbjct:   10 DARSKMLAGVDKLANTVKTTLGPKGRNVVLEQSYGNPTITNDGVTIAKAIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATGAAVDALHKMS 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 40/118 (33.90%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            A+A  +R +LGPKG + +L+   G   I NDG TI ++++++N++    A+L+ E++   +   GDGTT   V+A SL+++  K +  G +P+ +  G E   R  V  LE++A+  E
Sbjct:   21 ALANAVRVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELENKLENTGAQLIKEVASKTNDVAGDGTTTACVLAQSLVKEGLKNVAAGSNPMNLKRGMEKTVRHLVAELEKVAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THETN (60 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            G +A+KA      AVA  ++ +LGP+G + +L    G  T+TNDG TI  ++++    +NQ A+L+ E +   +   GDGTT   ++A  ++ +  K L  G +P+ +  G   A   AVE L RI++  +
Sbjct:    8 GEEARKALERGVNAVANTVKVTLGPRGRNVVLDKKYGTPTVTNDGVTIAREIELEDPFENQGAQLLKEAATKTNDVAGDGTTTATLLAQVMVLEGLKNLAAGANPMLLRRGMAKAVEAAVEGLRRISKPID 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            G +A++A      AVA  ++ +LGP+G + +L    G  T+TNDG TI  ++++    +NQ A+L+ E +   +   GDGTT   ++A +++ +  K L  G +P+ +  G   A   AVE L+RI++  +
Sbjct:    8 GEEARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEAATKTNDIAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPID 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_HELMI (60 kDa chaperonin OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 40/129 (31.01%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++A       +A  +R +LGPKG + +L+   G   ITNDG TI ++++++N I    A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ +  G E A   AV  ++ IA+  E
Sbjct:   10 EARRALEKGVNTLAEAVRVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPIENMGAQLVKEVATKTNDVAGDGTTTATILAQAIIREGMKNVAAGANPMVLKRGIEKAVEKAVAEIKAIAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_FUSNN (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. nucleatum GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A+K        +A  ++ +LGP+G + +L+   G   ITNDG TI ++++++    N  A L+ E++   +   GDGTT   ++A +++++  K+L  G +PI + +G E+A++ AVE L+  A+K E
Sbjct:   10 EARKKLEIGVNTLADAVKVTLGPRGRNVVLEKSYGAPLITNDGVTIAKEIELEDPFENMGAALVKEVAIKSNDVAGDGTTTATILAQAIVKEGLKMLSAGANPIFLKKGIELAAKEAVEVLKDKAKKIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 39/129 (30.23%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA+ A +    A+A  ++ ++GPKG + +L+   G   ITNDG TI ++++++++     AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G + A   A+E L+ I++  E
Sbjct:   10 DARHAMLRGVDALADAVKVTIGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDRFENMGAKLVAEVASKTNEVAGDGTTTATVLAQAMIREGLKNVTAGANPMILRKGIDKAVTRALEELKAISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_EUBR3 (60 kDa chaperonin OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G +A+ A  +    +A  +R +LGPKG + +L    G   ITNDG TI ++++++    N  A+L+ E++   +   GDGTT   V+  +++++  K LE G +PI +  G + A+  AVE L+ ++QK
Sbjct:    8 GSEARAALGAGVDKLANTVRVTLGPKGRNVVLDKSYGAPLITNDGVTIAKEVELEDAFENMGAQLVKEVATKTNDVAGDGTTTATVLTQAMVQEGMKNLEAGANPIVLRRGMKKATDKAVEALKDMSQK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_EUBE2 (60 kDa chaperonin OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 41/129 (31.78%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G++A+KA       +A  +R ++GPKG + +L    G   ITNDG TI + +++    +N  A+L+ E++   +   GDGTT   V+A +++ +  K L  G +PI + +G + A+  AVE +  +++K
Sbjct:    8 GIEARKALEEGVNKLANTVRVTIGPKGRNVVLDKSYGAPLITNDGVTIAKDIELEDAFENMGAQLVKEVAAKTNDVAGDGTTTATVLAQAMINEGMKNLAAGANPIVLRKGMKKATDCAVEAIAGMSEK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BIFLO (60 kDa chaperonin OS=Bifidobacterium longum GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++  +     +A  ++ +LGPKG + +L    G  TITNDG +I +++D+++      A+L+ E+++  D   GDGTT   V+A SL+ +  K +  G +PI +  G E A+ + V+ L   A+  E
Sbjct:   10 EARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKATEVIVKELVAAAKDVE 138          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_LACBA3.586e-1232.0060 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH601_GLOVI3.586e-1233.9060 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_THETN4.683e-1232.8260 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH60_THEBR4.683e-1232.0660 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH60_HELMI4.683e-1231.0160 kDa chaperonin OS=Heliobacterium modesticaldum ... [more]
CH60_FUSNN4.683e-1231.7860 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH60_EXISA4.683e-1230.2360 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH60_EUBR34.683e-1233.3360 kDa chaperonin OS=Eubacterium rectale (strain A... [more]
CH60_EUBE24.683e-1231.7860 kDa chaperonin OS=Eubacterium eligens (strain A... [more]
CH60_BIFLO4.683e-1231.7860 kDa chaperonin OS=Bifidobacterium longum GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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