FC875400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BIFLI (60 kDa chaperonin OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=groL PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12 Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 +A++ + +A ++ +LGPKG + +L G TITNDG +I +++D+++ A+L+ E+++ D GDGTT V+A SL+ + K + G +PI + G E A+ + V+ L A+ E Sbjct: 10 EARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKATEVIVKELVAAAKDVE 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BIFLD (60 kDa chaperonin OS=Bifidobacterium longum (strain DJO10A) GN=groL PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12 Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 +A++ + +A ++ +LGPKG + +L G TITNDG +I +++D+++ A+L+ E+++ D GDGTT V+A SL+ + K + G +PI + G E A+ + V+ L A+ E Sbjct: 10 EARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKATEVIVKELVAAAKDVE 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12 Identity = 45/143 (31.47%), Postives = 82/143 (57.34%), Query Frame = 3 Query: 150 LLRQQEEKSRL--RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 +LR EE R RG+DA VA ++ +LGPKG + +++ G TITNDG +I ++++++++ A+L+ E++ + GDGTT V+A +++++ K + G +PI + G + A AVE ++ I++K Sbjct: 4 MLRFSEEARRALERGVDA----------VADAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGIKNVTAGANPILVKRGIDKAVAAAVEKIKDISKK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_ROSS1 (60 kDa chaperonin 2 OS=Roseiflexus sp. (strain RS-1) GN=groL2 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12 Identity = 38/125 (30.40%), Postives = 72/125 (57.60%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 DA++A VA ++T+LGP+G + + G T+T+DG T+ +++++ +N A+L+VE++ + +GDGTT V+A S++ + K++ G +P+ I G + A V L+ +A Sbjct: 10 DARRALKRGVDIVADAVKTTLGPRGRNVSIDKKFGAPTVTHDGVTVAKEIELKDPFENMGARLLVEVATKTNDVVGDGTTTATVLAQSIVNEGLKMVAAGANPMLIKRGLDKAVEAVVAELKSVA 134
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_SYNFM (60 kDa chaperonin 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12 Identity = 36/133 (27.07%), Postives = 77/133 (57.89%), Query Frame = 3 Query: 171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 K + + A++A +S +A ++ +LGPKG + +++ G T+T DG T+ +++++ +N A+++ E++ GDGTT ++A S+ + KL+ G +P+ + G E A ++ V+ L++I++ Sbjct: 3 KQLIYDVKAREALLSGVNILADAVKVTLGPKGRNVVIEKAFGGPTVTKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDVAGDGTTTATILAQSIYYEGSKLVAAGANPMALKRGIEKAVQVVVDELKKISK 135
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 37/127 (29.13%), Postives = 77/127 (60.63%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 +A++A VA ++ +LGPKG + +++ G TITNDG +I ++++++++ A+L+ E++ + GDGTT V+A +++++ K + G +PI + G + A AVE ++++++K Sbjct: 10 EARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 37/127 (29.13%), Postives = 77/127 (60.63%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 +A++A VA ++ +LGPKG + +++ G TITNDG +I ++++++++ A+L+ E++ + GDGTT V+A +++++ K + G +PI + G + A AVE ++++++K Sbjct: 10 EARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 37/127 (29.13%), Postives = 77/127 (60.63%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 +A++A VA ++ +LGPKG + +++ G TITNDG +I ++++++++ A+L+ E++ + GDGTT V+A +++++ K + G +PI + G + A AVE ++++++K Sbjct: 10 EARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STAS1 (60 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groL PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 37/129 (28.68%), Postives = 74/129 (57.36%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 DA+++ + +A ++ ++GPKG + +L ITNDG TI ++++++ N AKL+ E++ + GDGTT V+A +++++ K + G +P+ + +G + A +A+E L I+Q + Sbjct: 10 DARQSMLRGVDKLANAVKVTIGPKGRNVVLDKEYTSPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVEVAIEALHEISQNVD 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACLS (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=groL PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 40/125 (32.00%), Postives = 72/125 (57.60%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 DA+ A + +A ++T+LGPKG + +L+ G ITNDG TI +++++ +N AKL+ E++ + GDGTT V+ +++ + K + G +P+ I G E+A+ AV ++ +A Sbjct: 10 DARTAMMRGIDILADTVKTTLGPKGRNVVLEKSYGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPVGIRRGIELAAETAVASIKEMA 134 The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 406
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bpback to top |