FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACLM (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 40/125 (32.00%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A +     +A  ++T+LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +P+ I  G E+A+  AV  ++ +A
Sbjct:   10 DARTAMMRGIDILADTVKTTLGPKGRNVVLEKSYGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPVGIRRGIELAAETAVASIKEMA 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACLA (60 kDa chaperonin OS=Lactococcus lactis subsp. lactis GN=groL PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 40/125 (32.00%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A +     +A  ++T+LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +P+ I  G E+A+  AV  ++ +A
Sbjct:   10 DARTAMMRGIDILADTVKTTLGPKGRNVVLEKSYGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPVGIRRGIELAAETAVASIKEMA 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORGA (60 kDa chaperonin OS=Borrelia garinii GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 37/127 (29.13%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G  T+T DG ++  +++++N      A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G + A  +A E + + A+K
Sbjct:   10 DARKSLLSGVEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELENPFENMGAQLLKEVAIKTNDVAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVNLAAEKIRQSAKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORBZ (60 kDa chaperonin OS=Borrelia burgdorferi (strain ZS7) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 37/127 (29.13%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G  T+T DG ++  +++++N      A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G + A  +A E + + A+K
Sbjct:   10 DARKSLLSGVEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELENPFENMGAQLLKEVAIKTNDVAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVNLAAEKIRQSAKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORBU (60 kDa chaperonin OS=Borrelia burgdorferi GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 37/127 (29.13%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G  T+T DG ++  +++++N      A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G + A  +A E + + A+K
Sbjct:   10 DARKSLLSGVEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELENPFENMGAQLLKEVAIKTNDVAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVNLAAEKIRQSAKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BIFAA (60 kDa chaperonin OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=groL PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 42/129 (32.56%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++  ++    +A  ++ +LGPKG + +L    G  TITNDG +I +++D+D+      A+L+ E+++  D   GDGTT   V+A SL+ +  K +  G +PI +  G E A+   V+ L   A+  E
Sbjct:   10 EARQGMLAGLDKLADTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLDDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVTAGSNPIALRRGIEKAADAIVKELVAAAKDVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_TSUTY (60 kDa chaperonin OS=Tsukamurella tyrosinosolvens GN=groL PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 38/118 (32.20%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            A+A  ++ +LGPKG + +L+   G  TITNDG +I +++++++      A+L+ E+++  D   GDGTT   V+A +L+ +  + +  G +P+ +  G E A     EHL + A++ E
Sbjct:   21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEAVTEHLLKAAKEVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PARDN (60 kDa chaperonin OS=Parascardovia denticolens GN=groL PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 41/129 (31.78%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++  +     +A  ++ +LGPKG + +L    G  TITNDG +I +++D+++      A+L+ E+++  D   GDGTT   V+A +L+ +  K +  G +PI +  G E AS+  V++L   A+  E
Sbjct:   10 EARQGMLEGLDELANTVKVTLGPKGRNVVLDKSYGAPTITNDGVSIAKEIDLEDPYQRIGAELVKEVAKKTDDVAGDGTTTATVLAQALVHEGLKNVTSGSNPIALRRGIEKASQTIVKNLLENAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 39/126 (30.95%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA++A ++    +A  ++ +LGPKG + +L        ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ I +G + A  +A+E L  I++
Sbjct:   10 DARRAMLAGVDKLADAVKVTLGPKGRNVVLDKKFVAPLITNDGVTIAKEIELEDPYENMGAKLVAEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGIRQGIDKAVAVALEELAAISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORAP (60 kDa chaperonin OS=Borrelia afzelii (strain PKo) GN=groL PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 37/127 (29.13%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G  T+T DG ++  +++++N      A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G + A  +A E + + A+K
Sbjct:   10 DARKSLLSGVEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELENPFENMGAQLLKEVAIKTNDVAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVSLAAEKIRQSAKK 136          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_LACLM7.988e-1232.0060 kDa chaperonin OS=Lactococcus lactis subsp. cre... [more]
CH60_LACLA7.988e-1232.0060 kDa chaperonin OS=Lactococcus lactis subsp. lac... [more]
CH60_BORGA7.988e-1229.1360 kDa chaperonin OS=Borrelia garinii GN=groL PE=3... [more]
CH60_BORBZ7.988e-1229.1360 kDa chaperonin OS=Borrelia burgdorferi (strain ... [more]
CH60_BORBU7.988e-1229.1360 kDa chaperonin OS=Borrelia burgdorferi GN=groL ... [more]
CH60_BIFAA7.988e-1232.5660 kDa chaperonin OS=Bifidobacterium adolescentis ... [more]
CH60_TSUTY1.043e-1132.2060 kDa chaperonin OS=Tsukamurella tyrosinosolvens ... [more]
CH60_PARDN1.043e-1131.7860 kDa chaperonin OS=Parascardovia denticolens GN=... [more]
CH60_MACCJ1.043e-1130.9560 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_BORAP1.043e-1129.1360 kDa chaperonin OS=Borrelia afzelii (strain PKo)... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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