FC875400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_VIBCH (60 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11 Identity = 39/133 (29.32%), Postives = 75/133 (56.39%), Query Frame = 3 Query: 171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 K L DA++ +S +A ++ +LGPKG +L G TIT DG ++ +++++ +N A+++ +++ + E GDGTT V+A +L+ + K + G++P+ + G + A AVE L ++A+ Sbjct: 4 KHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_ECOK1 (60 kDa chaperonin 2 OS=Escherichia coli O1:K1 / APEC GN=groL2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11 Identity = 38/128 (29.69%), Postives = 73/128 (57.03%), Query Frame = 3 Query: 186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 G DA+ V +A ++ +LGPKG + +L+ G TIT DG ++ +++++ +N A+++ E++ GDGTT V+A +L+ + K + G++P+ + G + A AVE L++I++ Sbjct: 9 GEDARARMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTSDNAGDGTTTATVLAQALIREGMKAVAAGMNPMDLKRGIDKAVTSAVEELKKISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_VIBC3 (60 kDa chaperonin 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11 Identity = 39/133 (29.32%), Postives = 75/133 (56.39%), Query Frame = 3 Query: 171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 K L DA++ +S +A ++ +LGPKG +L G TIT DG ++ +++++ +N A+++ +++ + E GDGTT V+A +L+ + K + G++P+ + G + A AVE L ++A+ Sbjct: 4 KHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_ANADF (60 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11 Identity = 36/125 (28.80%), Postives = 74/125 (59.20%), Query Frame = 3 Query: 195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 A++A + + +A + +LGPKG + +++ G TIT DG T+ ++++V+N+ A+++ E++ + GDGTT V+A +L E+ KL+ G +P+ + G + A + V L+++++ Sbjct: 12 AREAILRGVQTLAEAVAVTLGPKGRNVVIEKSFGSPTITKDGVTVAKEIEVENKFENMGAQMVREVASQTSDKAGDGTTTATVLARALFEEGLKLVAAGHNPMDLKRGIDRAVEVIVAELKKLSK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 42/127 (33.07%), Postives = 73/127 (57.48%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 +A+KA S +A ++ +LGPKG +L G TITNDG TI +++++ +N A+L+ E++ + GDGTT V+A SL+ + K + G + I +G E A A++ +++IA++ Sbjct: 10 EARKAMKSGVDKLANAVKITLGPKGRYVVLDKKFGAPTITNDGVTIAKEIELEDPFENMGAQLVKEVASKTNDIAGDGTTTATVLAQSLINEGLKNITAGANANHIKKGIEKAVAAAIDEIKKIAKQ 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_TSUPA (60 kDa chaperonin OS=Tsukamurella paurometabola GN=groL PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 38/118 (32.20%), Postives = 70/118 (59.32%), Query Frame = 3 Query: 225 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 A+A ++ +LGPKG + +L+ G TITNDG +I +++++++ A+L+ E+++ D GDGTT V+A +L+ + + + G +P+ + G E A EHL + A++ E Sbjct: 21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNMAAGANPLGLKRGIEKAVEAVTEHLLKEAKEVE 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_TREDE (60 kDa chaperonin OS=Treponema denticola GN=groL PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 35/136 (25.74%), Postives = 80/136 (58.82%), Query Frame = 3 Query: 171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 K L +A+K+ ++ + ++ ++ +LGPKG + ++ G T+T DG ++ +++++N+ A+L+ E++ + GDGTT V+A S++++ K + G+ P+ + G + A IAVE +++ +++ + Sbjct: 3 KQLLFNEEARKSLLAGVEQISNAVKVTLGPKGRNVLIDKSFGAPTVTKDGVSVAREVELENKFENMGAQLLKEVATKTNDVAGDGTTTATVLAYSMVKEGLKAVAAGMTPLELKRGIDKAVAIAVEDIQKNSKEIK 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 37/127 (29.13%), Postives = 77/127 (60.63%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 +A++A VA ++ +LGPKG + +++ G TITNDG +I ++++++++ A+L+ E++ + GDGTT V+A +++++ K + G +PI + G + A AVE ++++++K Sbjct: 10 EARRALERGVDKVANAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVERAVEEIKKLSKK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_FUSNP (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. polymorphum GN=groL PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 39/129 (30.23%), Postives = 77/129 (59.69%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 +A+K +A ++ +LGP+G + +L+ G ITNDG TI ++++++ N A L+ E++ + GDGTT ++A +++++ K+L G +PI + +G E+A++ A++ L+ A+K E Sbjct: 10 EARKKLEIGVNTLADAVKVTLGPRGRNVVLEKSYGAPLITNDGVTIAKEIELEDPFENMGAALVKEVAIKSNDVAGDGTTTATILAQAIVKEGLKMLSAGANPIFLKKGIELAAKEAIDVLKDKAKKIE 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_XANOR (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae GN=groL PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11 Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3 Query: 186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 G DA+ V +A ++ +LGPKG + +L+ G TIT DG ++ +++++ +N A+++ E++ + GDGTT V+A +L+ + K + G++P+ + G + A + AV L+ I++ Sbjct: 9 GEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISK 136 The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 406
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bpback to top |