FC875402
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875402 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15 Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 503 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 682 +LIHA+S+LAI A QV+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F EL Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPEL 66
BLAST of FC875402 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14 Identity = 60/148 (40.54%), Postives = 77/148 (52.03%), Query Frame = 2 Query: 248 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAEL 682 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF QI+ + +D+ + A+ A QVV +E +R GG L E D YPG FDPL L + AE+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEI 500 HSP 2 Score: 78.5666 bits (192), Expect = 3.481e-14 Identity = 54/151 (35.76%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 239 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAEL 682 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + L + + + E +R GG GE+ D YPG FDPL L D AE+ Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTDYTRAAEV 315 HSP 3 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 2 Query: 251 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAEL 682 PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L G+ +W++A I +V + A G + +A G + E +DP +YPG FDPL L D AE+ Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEI 127
BLAST of FC875402 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 79/241 (32.78%), Postives = 107/241 (44.40%), Query Frame = 2 Query: 59 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPLGLADDPEAFAEL 682 MAT + SSS F +AV + PS S G + R + V G G DR + S + SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G I G +Y + ++ ++ LMG E R G +G+ +P YPGG F+PLG D ++ EL Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLV--RAAATPPVKQG----GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKEL 223
BLAST of FC875402 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 2 Query: 251 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 670 P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG Q F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA 201
BLAST of FC875402 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 2 Query: 251 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 670 P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG + F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA 200
BLAST of FC875402 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 73/236 (30.93%), Postives = 102/236 (43.22%), Query Frame = 2 Query: 59 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAEL 682 MAT + SSS ++ + G RIS T S ++ +P + L S + SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PE+L + G+ E WF+ G I G +Y + ++ ++ LMG E R LG DP YPGG F+PLG D ++ EL Sbjct: 1 MATQALISSSS-----ISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKEL 221 The following BLAST results are available for this feature:
BLAST of FC875402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875402 ID=FC875402; Name=FC875402; organism=Citrus clementina; type=EST; length=682bpback to top |