FC875404

Overview
NameFC875404
Unique NameFC875404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_FRASN (Catalase-peroxidase OS=Frankia sp. (strain EAN1pec) GN=katG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 78/251 (31.08%), Postives = 102/251 (40.64%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP-------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPS 695
            P M+R+AWHSAGTY +   + GG  G  R A   +   N  LD A RLL P K+++   +S+ADL  LAG V +E  G     F  GR+D  EP       P+   L D +  G+  L    GA QMGL                               D++ VAL +GGHT G+ H                                      SG EG WT  P+ +DNS+F E L G +  L   P+
Sbjct:  101 PFMIRMAWHSAGTYRISDGRGGGGAGQQRFAPLNSWPDNGNLDKARRLLWPVKKKYGQALSWADLMILAGNVALESMGFTTFGFAGGREDVWEPDEDVYWGPETTWLGDERYTGDRELENPLGAVQMGLIYVNPEGPNGTPDPLAAARDIRETFRRMAMDDEETVALIAGGHTFGKTHGAGDPDNVGPEPEGAPLETQGLGWKNAFGTGKGADAITSGLEGAWTPTPVSWDNSFF-ETLFGYEWALTKSPA 350          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_DESAA (Catalase-peroxidase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=katG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 63/184 (34.24%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE-----------------------------------GRL---PDAKQGN-------DHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            PL +R+AWHSAGTY +    GG   G+ RLA   +   N  LD A RLL P K+++   IS+ADL  LAG   +E  G P   F  GR+D  EP Q+                                   G +   P+   GN         +R+ F A+M ++D++ VAL +GGHT G+CH
Sbjct:   89 PLFIRMAWHSAGTYRMGDGRGGAGSGSQRLAPLNSWPDNVNLDKARRLLWPIKQKYGKRISWADLMVLAGNCAIESMGLPTFGFAGGREDVWEPEQDVYWGSEEEWLATSDKPKSRYSGERDLENPLAAVQMGLIYVNPEGPDGNPDPIASGKDVRETF-ARMAMNDEETVALVAGGHTFGKCH 271          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_SPHAL (Catalase-peroxidase OS=Sphingopyxis alaskensis GN=katG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 62/186 (33.33%), Postives = 84/186 (45.16%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ----------------------------EGRL-----------PDAKQGNDH--------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            P  +R+AWH+AGTY      GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ LAG V +E  GGP   F  GR D  EP +                            EG L           P+  QGN H        +++ F  +M ++D++ VAL +GGHT G+ H
Sbjct:   91 PFFIRMAWHAAGTYRTADGRGGANSGQQRFAPLDSWPDNGNLDKARRLLWPIKQKYGNKISWADLFILAGNVAIESMGGPVFGFGGGRVDVYEPERDIYWGSEDKWVNQGVQTRIDPAKGMETIEGPLAAIQMGLIYVNPEGPQGNPHDDEGMARDMKETF-KRMAMNDEETVALTAGGHTFGKAH 275          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_ACIBL (Catalase-peroxidase OS=Acidobacteria bacterium (strain Ellin345) GN=katG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 73/239 (30.54%), Postives = 96/239 (40.17%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------EGRLPDAKQ--GNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCHKE------------------------------------RSGFEGPWTRHPLIFDNSYFTEL 656
            P  +R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   +S+ADL  LAG V +E  G     F  GR+D  EP +      EG+  D K+  G   L    GA QMGL                              +D++ VAL +GGHT G+ H                                       SG EG WT +P+ +DN +F  L
Sbjct:  104 PFFIRMAWHSAGTYRIGDGRGGAGSGEQRFAPLNSWPDNGNLDKARRLLWPIKQKYGRKLSWADLMVLAGNVALESMGFKTFGFAGGREDVWEPSEDIYWGPEGKWLDDKRYSGERDLENPLGAVQMGLIYVNPEGPNGKPDPAAAAVDIRETFARMAMNDEETVALIAGGHTFGKTHGAGVPTEYVGPEPEGAGIEEQGLGWKNKLGHGHGYHTITSGLEGAWTTNPIKWDNGFFDNL 342          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_MARMS (Catalase-peroxidase OS=Marinomonas sp. (strain MWYL1) GN=katG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 70/240 (29.17%), Postives = 92/240 (38.33%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGG-PFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ-----------------------------------------EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRHPLIFDNSYFTEL 656
            P  +R+AWHSAGTY      GG   GT R A   +   N  LD A RLL P K+++   IS+ADL  LAG   +E  G     F  GR D  +P +                                         EG+ PD       +R  FG +M ++D++ VAL +GGHT G+ H                                      SG EG WT+ P+ +DN YF  L
Sbjct:   96 PFFIRMAWHSAGTYRTADGRGGATSGTQRFAPLNSWPDNVNLDKARRLLWPIKQKYGRKISWADLMILAGNCALESMGFKTFGFAGGRVDVWQPEEDIYWGTEKTWLDDERYTGDRELENPLAAVQMGLIYVNPEGPEGK-PDTLASARDIRDTFG-RMAMNDEETVALIAGGHTFGKAHGAGDAAQVGADPEAAGIAEQGFGWSNSMGTGKGVDTISSGLEGAWTKSPIAWDNGYFENL 333          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_PSEMY (Catalase-peroxidase OS=Pseudomonas mendocina (strain ymp) GN=katG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 71/244 (29.10%), Postives = 98/244 (40.16%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRL--------PDAKQGND--HLRQVFGA-------------------------------QMGLSDKDIVAL-SGGHTLGRCH-----------------------------------KERSGFEGPWTRHPLIFDNSYFTELLTGE 668
            P  +R+AWHSAGTY     + GG  G  R A   +   N  +D + RLL P K+++  +IS+ADLY LAG V +E  G     F  GR+D  EP Q+            D K+ ND   L   FGA                               +M ++D++IVAL +GGHT G+ H                                      SG E  WT+ P ++ N++F  L   E
Sbjct:   84 PQFIRMAWHSAGTYRTTDGRGGGGRGQQRFAPLNSWPDNVNIDKSRRLLWPIKQKYGQSISWADLYILAGNVALESMGFRTFGFGAGREDVWEPDQDVNWGAEVAWLGVDPKRVNDERELTAPFGATHMGLIYVNPEGPNASGDYLAAAKDIRATFYRMAMNDEEIVALIAGGHTFGKAHGAAPESHKGPEPEGAPIEAQGLGWTSNFGSGFGKDTVSSGLEVTWTKTPALWSNNFFENLFKFE 327          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_ACIBY (Catalase-peroxidase OS=Acinetobacter baumannii (strain AYE) GN=katG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 60/180 (33.33%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  165 NCTPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDH--------------------------------------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            N T L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ LAG + +E +G     F  GR+D  EP  +    D K+   H                                      +R  FG  M + D++IVAL +GGHTLG+ H
Sbjct:   88 NYTGLFIRLAWHAAGTYRMGDGRGGAGRGQQRFAPLNSWPDNASLDKARRLLWPVKQKYGQKISWADLFILAGNIALESSGFRTFGFGAGREDVWEPDNDVNWGDEKEWLAHRNSEALAGSNLAATEMGLIYVNPEGPQASGDPRSAAPFIRATFG-NMAMDDEEIVALIAGGHTLGKTH 266          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_ACIBT (Catalase-peroxidase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=katG PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 60/180 (33.33%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  165 NCTPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDH--------------------------------------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            N T L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ LAG + +E +G     F  GR+D  EP  +    D K+   H                                      +R  FG  M + D++IVAL +GGHTLG+ H
Sbjct:   88 NYTGLFIRLAWHAAGTYRMGDGRGGAGRGQQRFAPLNSWPDNASLDKARRLLWPVKQKYGQKISWADLFILAGNIALESSGFRTFGFGAGREDVWEPDNDVNWGDEKEWLAHRNSEALAGSNLAATEMGLIYVNPEGPQASGDPRSAAPFIRATFG-NMAMDDEEIVALIAGGHTLGKTH 266          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_ACIBC (Catalase-peroxidase OS=Acinetobacter baumannii (strain ACICU) GN=katG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 60/180 (33.33%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  165 NCTPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDH--------------------------------------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            N T L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ LAG + +E +G     F  GR+D  EP  +    D K+   H                                      +R  FG  M + D++IVAL +GGHTLG+ H
Sbjct:   88 NYTGLFIRLAWHAAGTYRMGDGRGGAGRGQQRFAPLNSWPDNASLDKARRLLWPVKQKYGQKISWADLFILAGNIALESSGFRTFGFGAGREDVWEPDNDVNWGDEKEWLAHRNSEALAGSNLAATEMGLIYVNPEGPQASGDPRSAAPFIRATFG-NMAMDDEEIVALIAGGHTLGKTH 266          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_ACIB5 (Catalase-peroxidase OS=Acinetobacter baumannii (strain AB0057) GN=katG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 60/180 (33.33%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  165 NCTPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDH--------------------------------------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            N T L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ LAG + +E +G     F  GR+D  EP  +    D K+   H                                      +R  FG  M + D++IVAL +GGHTLG+ H
Sbjct:   88 NYTGLFIRLAWHAAGTYRMGDGRGGAGRGQQRFAPLNSWPDNASLDKARRLLWPVKQKYGQKISWADLFILAGNIALESSGFRTFGFGAGREDVWEPDNDVNWGDEKEWLAHRNSEALAGSNLAATEMGLIYVNPEGPQASGDPRSAAPFIRATFG-NMAMDDEEIVALIAGGHTLGKTH 266          
The following BLAST results are available for this feature:
BLAST of FC875404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
KATG_FRASN3.740e-1431.08Catalase-peroxidase OS=Frankia sp. (strain EAN1pec... [more]
KATG_DESAA4.884e-1434.24Catalase-peroxidase OS=Desulfatibacillum alkenivor... [more]
KATG_SPHAL6.379e-1433.33Catalase-peroxidase OS=Sphingopyxis alaskensis GN=... [more]
KATG_ACIBL6.379e-1430.54Catalase-peroxidase OS=Acidobacteria bacterium (st... [more]
KATG_MARMS1.421e-1329.17Catalase-peroxidase OS=Marinomonas sp. (strain MWY... [more]
KATG_PSEMY2.424e-1329.10Catalase-peroxidase OS=Pseudomonas mendocina (stra... [more]
KATG_ACIBY2.424e-1333.33Catalase-peroxidase OS=Acinetobacter baumannii (st... [more]
KATG_ACIBT2.424e-1333.33Catalase-peroxidase OS=Acinetobacter baumannii (st... [more]
KATG_ACIBC2.424e-1333.33Catalase-peroxidase OS=Acinetobacter baumannii (st... [more]
KATG_ACIB52.424e-1333.33Catalase-peroxidase OS=Acinetobacter baumannii (st... [more]

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Properties
Property NameValue
Genbank descriptionC31403E09EF CTVClemen1 Citrus clementina cDNA clone C31403E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875404 ID=FC875404; Name=FC875404; organism=Citrus clementina; type=EST; length=713bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCACTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGNCACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGNCATTGCCATCCGACAA
GGCCCTTCTGGAT
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