FC875404

Overview
NameFC875404
Unique NameFC875404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_SALRD (Catalase-peroxidase OS=Salinibacter ruber (strain DSM 13855) GN=katG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 70/243 (28.81%), Postives = 94/243 (38.68%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE------------GRL----------------------------PDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRHPLIFDNSYFTELLTGE 668
            PL +R++WH+AGTY      GG  G   RLA   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  G     F  GR+D  +P +             GR                             PD +     +R+ FG +M ++D++  AL +GGHT G+ H                                      SG EGPWT  P  +D  Y   LL  E
Sbjct:   84 PLFIRMSWHAAGTYRTTDGRGGSSGGRQRLAPLNSWPDNANLDKARRLLWPVKQKYGRKISWADLLVLAGNVAMESMGFETFGFAGGREDDFKPDESIDWGPEDEMETWGRFNEEDELDNPLGATVMGLIYVNPEGPESTPDPEWSAQRIRKSFG-RMAMNDRETAALIAGGHTFGKVHGADTDEHLQAEPEAAPIEQQGLGWHNEHGSGKGGDTITSGIEGPWTDAPTEWDMGYLDFLLDYE 325          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_SYNPW (Catalase-peroxidase OS=Synechococcus sp. (strain WH7803) GN=katG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 69/242 (28.51%), Postives = 93/242 (38.43%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE------------------GRL----------------------PDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRHPLIFDNSYFTELLTGE 668
            L +R+AWHSAGTY      GG   G  R A   +   N  LD A RLL P K ++   IS+ADL  L+G V +E  G     F  GR+D  +P ++                  G L                      PD       +R+ F A+MG++ ++ VAL +GGHT G+CH                                      SG EG W  +P  +D  YF  + T E
Sbjct:   89 LFIRLAWHSAGTYRTGDGRGGAGHGNQRFAPLNSWPDNTNLDKARRLLWPIKRKYGNAISWADLIILSGNVALESMGFRTFGFAGGREDIWQPEEDVFWGKETGWLKDERRNDKGELNQPLAAVEMGLIYVNPEGPHGEPDPVASGRDVRETF-ARMGMTVEETVALVAGGHTFGKCHGAAPDSHLEAEPEGAALHEQGLGWRNTYESGKGEHTITSGIEGAWKPNPTRWDQGYFQMMFTYE 329          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: PEM1_PHACH (Manganese peroxidase 1 OS=Phanerochaete chrysosporium GN=MNP1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  234 GGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHK-ERSGFEGPWTRHPLIFDNSYFTELL 659
            GG  G+M L    E   SANNG+D +V  L PF ++  TIS ADL Q AG V +    G P + F  GR +K     +G +P+ +     + Q F    G +  ++V+L   H++ R  K +++    P+   P  FD   F E+L
Sbjct:   82 GGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVL 227          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_RHOPS (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisB5) GN=katG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 61/177 (34.46%), Postives = 80/177 (45.20%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ-----EGRL---------------------------PDAKQGN-------DHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            LM+R+AWHSAGTY      GG   G  R A   +   N  LD A RLL P K+++   IS+ADLY L G V +E  G     F  GR D  EP +     EG                             P+   GN         +R+ F A+M ++D++ VAL +GGHT G+ H
Sbjct:   91 LMIRMAWHSAGTYRTTDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLYVLTGNVALESMGFKTFGFAGGRADTWEPEELFWGPEGSWLGDERYSGERQLHDALGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTH 266          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_RHOPB (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisB18) GN=katG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 61/177 (34.46%), Postives = 80/177 (45.20%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ-----EGRL---------------------------PDAKQGN-------DHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            L +R+AWHSAGTY      GG   G  R A   +   N  LD A RLL P K+++   IS+ADLY LAG V +E  G     F  GR D  EP +     EG                             P+   GN         +R+ F A+M ++D++ VAL +GGHT G+ H
Sbjct:   89 LFIRMAWHSAGTYRTTDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGQKISWADLYVLAGNVALESMGFQTFGFAGGRADTWEPEELFWGPEGTWLGDERYSGERQLADPLGAVQMGLIYVNPEGPNGNPDPLGSAKDIRETF-ARMAMNDEETVALIAGGHTFGKTH 264          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_RHOP2 (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain HaA2) GN=katG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 61/177 (34.46%), Postives = 80/177 (45.20%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ-----EGRL---------------------------PDAKQGN-------DHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            LM+R+AWHSAGTY      GG   G  R A   +   N  LD A RLL P K+++   IS+ADLY L G V +E  G     F  GR D  EP +     EG                             P+   GN         +R+ F A+M ++D++ VAL +GGHT G+ H
Sbjct:   91 LMVRMAWHSAGTYRTTDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLYVLTGNVALESMGFKTFGFAGGRADTWEPEELFWGPEGSWLGDERYSGERELSDPLGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTH 266          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_CAUCR (Catalase-peroxidase OS=Caulobacter crescentus GN=katG PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 58/177 (32.77%), Postives = 81/177 (45.76%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRL--------------------------PDAKQGND-------HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   +S+ADLY L G V +E  G     F  GR D+ EP      P+   L                          P+   GN         +R+ F A+M ++D++ VAL +GGHT G+ H
Sbjct:   89 LFIRLAWHAAGTYRITDGRGGAGGGQQRFAPLNSWPDNTNLDKARRLLWPIKQKYGAKLSWADLYVLVGNVALESMGFKTFGFAGGRADQWEPEELYWGPESTWLDDKRYSGERELDSPLGAVQMGLIYVNPEGPNGNPDPLASARDIRETF-ARMAMNDEETVALIAGGHTFGKAH 264          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_NITWN (Catalase-peroxidase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=katG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 71/237 (29.96%), Postives = 96/237 (40.51%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ-----EGR----------------------------------LPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH------------------------KER-----------SGFEGPWTRHPLIFDNSYFTEL 656
            LM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADLY LAG   +E  G   + F  GR D+ EP +     EG                                    PD       +R+ F  +M ++D++ VAL +GGHT G+ H                        K R           SG E  WT+ P  +DN++F  L
Sbjct:   89 LMVRMAWHSAGTYRITDGRGGAGGGQQRFAPLNSWPDNVLLDRARRLLWPIKQKYGRKISWADLYVLAGNAALESMGFKPLGFAGGRVDEWEPQELFWGPEGAWLGDERYSGERELAEPLAAVQMGLIYVNPEGPNGQPDPLAAAKDIRETF-LRMAMNDEETVALIAGGHTFGKTHGAGDASLVGPVPDSAPIEDQGLGWKGRFGTGKGADAIGSGLEVTWTQTPTKWDNNFFDTL 324          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: PEM4_PHACH (Manganese peroxidase H4 OS=Phanerochaete chrysosporium PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 3
Query:  234 GGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRHPLIFDNSYFTELL 659
            GG  G+M      E   SAN+G+D +V  L PF ++  TIS ADL Q AG V +    G P + F  GR +   P  EG +P+ +     + Q F      S  ++V+L   HT+ R  K     +  P+   P  FD   F E+L
Sbjct:   85 GGADGSMLHFPTIEPNFSANSGIDDSVNNLLPFMQKHDTISAADLVQFAGAVALSNCPGAPRLEFMAGRPNTTIPAVEGLIPEPQDSVTKILQRFEDAGNFSPFEVVSLLASHTVARADKVDETIDAAPFDSTPFTFDTQVFLEVL 230          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_SOLUE (Catalase-peroxidase OS=Solibacter usitatus (strain Ellin6076) GN=katG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 63/176 (35.80%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            LM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  G     F  GR D  EP      P+   L D +  G   L +  GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   99 LMIRMAWHSAGTYRITDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPVKQKYGDKISWADLMVLAGNVALESMGFKTFGFAGGRSDVWEPEELYWGPEGTWLGDERYSGERQLSEPLGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETFFRMAMNDEETVALIAGGHTFGKTH 274          
The following BLAST results are available for this feature:
BLAST of FC875404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
KATG_SALRD9.211e-1328.81Catalase-peroxidase OS=Salinibacter ruber (strain ... [more]
KATG_SYNPW1.571e-1228.51Catalase-peroxidase OS=Synechococcus sp. (strain W... [more]
PEM1_PHACH3.500e-1233.56Manganese peroxidase 1 OS=Phanerochaete chrysospor... [more]
KATG_RHOPS3.500e-1234.46Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
KATG_RHOPB4.571e-1234.46Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
KATG_RHOP24.571e-1234.46Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
KATG_CAUCR7.798e-1232.77Catalase-peroxidase OS=Caulobacter crescentus GN=k... [more]
KATG_NITWN1.018e-1129.96Catalase-peroxidase OS=Nitrobacter winogradskyi (s... [more]
PEM4_PHACH1.330e-1133.56Manganese peroxidase H4 OS=Phanerochaete chrysospo... [more]
KATG_SOLUE1.330e-1135.80Catalase-peroxidase OS=Solibacter usitatus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31403E09EF CTVClemen1 Citrus clementina cDNA clone C31403E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875404 ID=FC875404; Name=FC875404; organism=Citrus clementina; type=EST; length=713bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCACTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGNCACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGNCATTGCCATCCGACAA
GGCCCTTCTGGAT
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