FC875404

Overview
NameFC875404
Unique NameFC875404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_RHOP5 (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisA53) GN=katG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 61/176 (34.66%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            L +R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L+G V +E  G     F  GR D  EP      P+   L D++  G   L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   90 LFIRLAWHSAGTYRISDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLFVLSGNVALESMGFKTFGFAGGRADTWEPEELYWGPEGTWLGDSRYSGERELSDPLGAVQMGLIYVNPEGPNGNPDPVGSAKDIRETFYRMAMNDEETVALIAGGHTFGKTH 265          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_CHRSD (Catalase-peroxidase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=katG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 68/247 (27.53%), Postives = 101/247 (40.89%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTG--------GPDIPFHPGRD-----------------------DKAEPP----QEGRL----------PDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH---------------------------KER--------SGFEGPWTRHPLIFDNSYFTELLTGE 668
            +  R+AWHSAG+Y +   + GG  G  R A   +   N   D   RLL P K+++   IS+ADL  L+G +  EV G        G +  +HP +D                       D  E P    Q G +          PD ++  + +R+ F A+M ++D++  AL +GGHT+G+CH                           K R        SG EG WT++P  +D  +F  L   E
Sbjct:   85 MFARVAWHSAGSYRLADGRGGGGTGNQRFAPLNSWPDNVNTDKGRRLLWPIKKKYGNKISWADLMVLSGTIAYEVAGLKTYGFAFGREDIWHPEKDIYWGDEKEWLAPSDERYADVEKPDTMENPLAAVQMGLIYVNPEGVNGQPDPQKTAEQVRETF-ARMAMNDEETAALTAGGHTIGKCHGNGEAENLSAEPEAADVEYQGIGWMNTKGRGIGRDTVVSGIEGAWTKNPTQWDMGWFDMLFNHE 330          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_NOCSJ (Catalase-peroxidase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=katG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 67/234 (28.63%), Postives = 91/234 (38.89%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAKQGNDH---------------------------------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE-----------------------------------RSGFEGPWTRHPLIFDNSYF 647
            L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K++    IS+ADL   AG V +E  G     F  GR+D  EP      P++  L D +   D                                  +R+ F A+M ++D++ VAL +GGHT G+ H                                      SG E  WT HP  +DN +F
Sbjct:  123 LFVRMAWHAAGTYRIHDGRGGAGQGAQRFAPLNSWPDNANLDKARRLLWPVKQKHGQKISWADLIVFAGNVALEDMGFTTFGFGFGREDIWEPEEIYWGPEDTWLGDERYSGDRELSNPLGAVQMGLIYVNPEGPNGNPDPLASARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDADLVGPEPEAAPLEAQGLGWHSSFGSGKGEDTITSGIEVTWTYHPTRWDNEFF 355          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG_BORA1 (Catalase-peroxidase OS=Bordetella avium (strain 197N) GN=katG PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 55/145 (37.93%), Postives = 70/145 (48.28%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQ--GNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSG 596
            PL +R+AWHSAGTY V    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L G V +E  G     F  GR+D  EP Q+    D K   G D        + G ++   VA   GH  G+ H    G
Sbjct:   84 PLFIRMAWHSAGTYRVGDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKKKYGNKISWADLFILTGNVALETMGFKTFGFGGGREDTWEPDQDVYWGDEKTWLGGD-------LRYGKNEAQPVADKAGH--GKEHGRTDG 219          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: KATG3_MYCS2 (Catalase-peroxidase 3 OS=Mycobacterium smegmatis GN=katG3 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 67/245 (27.35%), Postives = 92/245 (37.55%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK---------------------------------------AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH------------------------------------KERSGFEGPWTRHPLIFDNSYFTELLTGEKD 674
            PL+LR+AWH AGTY +    GG   G +R A   +   N  LD A RLL P K+++   IS++DL   AG   +E  G     F  GR+D                                         +P     LPD       +R+ F  +MG++D++ VAL +GGHT G+ H                                       SG +G WT  P  +D S+ T L   E D
Sbjct:   99 PLVLRMAWHFAGTYRIGDGRGGAGAGMLRFAPLNSFPDNRNLDKARRLLWPVKKKYGRKISWSDLMIFAGNRALESMGCRTFGFAGGREDAWEADETYWGPESTWLADERHSGVRDLDQPLAASEMGLIYVDPQGPATLPDPLASARDIRETF-RRMGMNDEETVALIAGGHTFGKSHGPTDPSRCLGPEPEGAPLEALGLGWVNSFGTGNGADTVTSGLDGIWTATPTKWDMSFLTTLFAYEWD 342          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: PEM3_PHACH (Manganese peroxidase H3 OS=Phanerochaete chrysosporium PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 48/166 (28.92%), Postives = 76/166 (45.78%), Query Frame = 3
Query:  180 MLRIAWHSAGTYDVKT--KTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRHPLIFDNSYFTELL 659
            ++R+ +H A           GG  G+M L    E   SANNG+D +V  L PF ++  TIS  D+ Q  G V +    G P + F   R +K  P  +G +P+ +     + + F      S  ++V+L   H++ R  K     +  P+   P +FD   F E+L
Sbjct:   65 VIRLTFHDAIAISQSKGPSAGGADGSMLLFPTIEPNFSANNGIDDSVNNLIPFMQKHNTISAGDIVQFTGAVALTNCPGAPQLEFLARRPNKTIPAIDGLIPEPQDSVTSILERFKDAGNFSPFEVVSLLASHSVARADKVDETIDAAPFDTTPFVFDTQIFLEVL 230          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: PEM2_PHLRA (Manganese peroxidase 2 OS=Phlebia radiata GN=mnp2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 47/146 (32.19%), Postives = 67/146 (45.89%), Query Frame = 3
Query:  234 GGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRC-HKERSGFEGPWTRHPLIFDNSYFTELL 659
            GG  G+M +    E A   N G+  +V  L PF  QFPTIS  DL Q AG V +    G P + F  GR +   P  +G +P+ +     +   F      S  ++VAL   H++ R  H + +    P+   P  FD   F E+L
Sbjct:   85 GGADGSMLIFPTVEPAFFPNLGIADSVNNLIPFLSQFPTISAGDLVQFAGAVAISNCPGAPQLEFLAGRPNATAPAIDGLIPEPQDDVTKILARFKDAGNFSPAEVVALLASHSIARADHVDPTLDAAPFDSTPFDFDTQIFLEVL 230          
The following BLAST results are available for this feature:
BLAST of FC875404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
KATG_RHOP52.269e-1134.66Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
KATG_CHRSD2.269e-1127.53Catalase-peroxidase OS=Chromohalobacter salexigens... [more]
KATG_NOCSJ2.963e-1128.63Catalase-peroxidase OS=Nocardioides sp. (strain BA... [more]
KATG_BORA12.963e-1137.93Catalase-peroxidase OS=Bordetella avium (strain 19... [more]
KATG3_MYCS23.870e-1127.35Catalase-peroxidase 3 OS=Mycobacterium smegmatis G... [more]
PEM3_PHACH5.054e-1128.92Manganese peroxidase H3 OS=Phanerochaete chrysospo... [more]
PEM2_PHLRA6.601e-1132.19Manganese peroxidase 2 OS=Phlebia radiata GN=mnp2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403E09EF CTVClemen1 Citrus clementina cDNA clone C31403E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875404 ID=FC875404; Name=FC875404; organism=Citrus clementina; type=EST; length=713bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCACTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGNCACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGNCATTGCCATCCGACAA
GGCCCTTCTGGAT
back to top