FC875422

Overview
NameFC875422
Unique NameFC875422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: ARK72_RAT (Aflatoxin B1 aldehyde reductase member 2 OS=Rattus norvegicus GN=Akr7a2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 57/183 (31.15%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   77 IKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPREN--IQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            ++    +G+   DTA  Y    +E +LG     L   +  +++ATK        D   +K  P+ VRS  E SLKRL    +DL+Y H  D   PI ET+   ++L +EGK   +GLS       A   T+ +++     T  Q  ++  TR +E E++P  R  G+    Y+PL  G   GK
Sbjct:   68 VRAFLERGLNELDTAFMYCDGQSESILGSLGLGLGSGDCTVKIATKAN----PWDGKSLK--PDSVRSQLETSLKRLQCPRVDLFYLHAPDHGTPIVETLQACQQLHQEGKFVELGLSNYASWEVAEIYTLCKSNGWILPTVYQGMYNATTRQVETELLPCLRYFGLRFYAYNPLAGGLLTGK 244          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: AAD3_YEAST (Putative aryl-alcohol dehydrogenase AAD3 OS=Saccharomyces cerevisiae GN=AAD3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 49/188 (26.06%), Postives = 85/188 (45.21%), Query Frame = 2
Query:   89 FNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGNPEYVRSC----------CEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            +  G  F D A+      +E  +G+ ++    R+ I +ATKF    +  D     G       C             SL++L  ++ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      +   P +  Q +W++  RD E +I+P+ R  G+ + P+  +G G F  K
Sbjct:   60 YEAGGNFIDAANNCQNEQSEEWIGEWIQSRRLRDQIVIATKF----IKSDKKYKAGESNTANYCGNHKRSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEFMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSYGKTPFSIYQGKWNVLNRDFERDIIPMARHFGMALAPWDVMGGGRFQSK 243          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 53/198 (26.77%), Postives = 93/198 (46.97%), Query Frame = 2
Query:   38 YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            + S +S+E    ++  A+  G+  FDTA+ Y     E  LG  LK     R +  + TK  +   G  A   +G + +++      SL+RL + Y+D+ + +R D + P+EE +  M  ++ +G   Y G S      I  A+++       P    Q E  L+ R+ +E ++  L  ++G+G V + PL  G    K
Sbjct:  101 FGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFW---GGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGLITSK 295          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: ARK73_RAT (Aflatoxin B1 aldehyde reductase member 3 OS=Rattus norvegicus GN=Akr7a3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 57/186 (30.65%), Postives = 83/186 (44.62%), Query Frame = 2
Query:   77 IKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPREN--IQVATKFGFAELGLDAVIVKGN---PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            ++    +G T  DTA  Y    +E +LG     L R    +++ATK         A  + G    P  VR   E SLKRL    +DL+Y H  D   PIEET+    +L +EGK   +GLS       A   T+ + +     T  Q  ++  TR +E E+ P  R  G+    ++PL  G   G+
Sbjct:   28 VRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATK---------AAPMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGR 204          
The following BLAST results are available for this feature:
BLAST of FC875422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARK72_RAT2.898e-1231.15Aflatoxin B1 aldehyde reductase member 2 OS=Rattus... [more]
AAD3_YEAST8.433e-1226.06Putative aryl-alcohol dehydrogenase AAD3 OS=Saccha... [more]
KCAB3_HUMAN1.101e-1126.77Voltage-gated potassium channel subunit beta-3 OS=... [more]
ARK73_RAT5.466e-1130.65Aflatoxin B1 aldehyde reductase member 3 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionC31403G04EF CTVClemen1 Citrus clementina cDNA clone C31403G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875422 ID=FC875422; Name=FC875422; organism=Citrus clementina; type=EST; length=642bp
AAAGCTGGGATTTGGATGCATGAGCCTGAGTGGAGGTTACAATTCTCCAG
TCTCTGAAGAGGATGGCATCTCTATAATAAAGCATGCTTTCAATAAAGGA
ATCACTTTCTTTGATACTGCTGATAAATATGGACCATATACTAATGAAAT
TCTTCTTGGAAAGGCCTTGAAGATGTTGCCCAGAGAAAACATACAAGTAG
CCACAAAGTTTGGGTTTGCAGAATTGGGACTTGATGCTGTGATCGTGAAG
GGTAACCCTGAGTATGTGCGCTCATGTTGTGAAGCTAGCTTGAAGCGCCT
TGATGTGGAATACATTGATCTGTATTATCAACATAGAGTGGACACATCAG
TCCCCATAGAGGAAACTATTGGCGAAATGAAAAAGCTGGTGGAAGAGGGT
AAAATCAAGTACATAGGATTATCTGAGGCTAGCCCAGATACAATTAGGAG
AGCACATGCTGTTCATCCTATCACAGCTGTACAACTGGAATGGTCTCTTT
GGACTCGTGACATTGAGAACGAGATAGTACCACTTTGCAGGGAGCTTGGC
ATTGGAATAGTTCCATACAGTCCTCTTGGTCGTGGATTTTTCGGTGGCAA
GCCGTTGTGGAAGTGTGCCTCAGATAGCTTTTTGAATTTCTT
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