FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACAN (Aminomethyltransferase OS=Bacillus anthracis GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACAH (Aminomethyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACAC (Aminomethyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACAA (Aminomethyltransferase OS=Bacillus anthracis (strain A0248) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_METCA (Aminomethyltransferase OS=Methylococcus capsulatus GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  228 TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFT 614
            TALH+ H+A G +M  F+GW +P+ Y   I E     R+   +FDVSH+  + ++G    PFL +++  DVA LA PG        N++GG +DD V+  + D    L++NAG R+KDL+ +      F+
Sbjct:    5 TALHEEHLALGARMTEFSGWELPLHYGSQIAEHHA-VRRAAGMFDVSHLGVVDVEGLQAAPFLRRVLANDVARLAEPGRMLYGCMLNQDGGIVDDLVVGFIDDRRFRLILNAGTREKDLSWLHRQAAPFS 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CLOB1 (Aminomethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            ++LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS
Sbjct:    2 KDLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIVDVS 141          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYMTH (Aminomethyltransferase OS=Symbiobacterium thermophilum GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            E+LK+T L++ H+  G +MVPF GW MP+QY  S++E     R+   LFDVSHM    ++G   +  ++ +   D A LA G     +   ENG  +DD +I ++ +   +LVVNAG   KD
Sbjct:    3 ESLKRTPLYELHLKLGARMVPFGGWEMPVQYS-SVIEEHRAVREAAGLFDVSHMGEFEVRGPQALDLIQLVSTNDAAKLAVGRVQYALMCYENGTVVDDILIYRLDEHRYWLVVNAGNTQKD 123          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ALKOO (Aminomethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            LK+T L D H   GGK+V FAGW M +Q++    E     R    +FDVSHM  + ++GKD   F++ LV  DVA L       T     +GG +DD ++ K   ++ YLVVNA   DKD A
Sbjct:    4 LKRTPLFDAHNRYGGKLVDFAGWEMSVQFEGLTAEHEA-VRNAAGIFDVSHMGEIEVRGKDAEAFVQYLVTNDVAALEDNQIVYTFMCYPDGGIVDDLLVYKFNKEYYYLVVNASNSDKDFA 124          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNS3 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9311) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  228 TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDH--IYLVVNAGCRDKDLAHIEAHMK 605
            T LHD  +A GG+MV FAGW MP+Q+   +M      R +  +FD+SHM  L ++G +    L++LV +D+  + PG    +V  NE GG IDD +I     + + + H  + +V+NA C + D A I  H++
Sbjct:    6 TPLHDLCIAAGGRMVSFAGWEMPVQFS-GLMAEHKAVRSDSGMFDISHMGVLRIEGANPKDALQQLVPSDLHRIGPGQACYSVLLNEQGGIIDDLIIYDLGPSLLDESHETLLVVINAACAETDTAWIRQHLE 137          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ENTS8 (Aminomethyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA I  H + +      VS  + D+ SL+
Sbjct:    3 QQTPLYEQHNLCGARMVDFHGWMMPLHYGSQIDEHHA-VRNDAGMFDVSHMTIVDLRGARTREFLRYLLANDVAKLTQPGKALYTAMLNASGGVIDDLIVYFMTEDYFRLVVNSATREKDLAWINEHAEPY-----GVSVTVRDDLSLI 145          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BACAN2.882e-1838.28Aminomethyltransferase OS=Bacillus anthracis GN=gc... [more]
GCST_BACAH2.882e-1838.28Aminomethyltransferase OS=Bacillus thuringiensis (... [more]
GCST_BACAC2.882e-1838.28Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_BACAA2.882e-1838.28Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_METCA3.764e-1836.92Aminomethyltransferase OS=Methylococcus capsulatus... [more]
GCST_CLOB13.764e-1837.59Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_SYMTH4.916e-1838.52Aminomethyltransferase OS=Symbiobacterium thermoph... [more]
GCST_ALKOO4.916e-1840.98Aminomethyltransferase OS=Alkaliphilus oremlandii ... [more]
GCST_SYNS36.420e-1836.84Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_ENTS86.420e-1837.58Aminomethyltransferase OS=Enterobacter sakazakii (... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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