FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ENT38 (Aminomethyltransferase OS=Enterobacter sp. (strain 638) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L  PG    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      V   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLKTPGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWISQHAEKYA-----VEITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHRVO (Aminomethyltransferase OS=Chromobacterium violaceum GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L D H+A G KMV FAGW MPI Y   + E  +  R +  +FDVSHM  + + G D   +L+KL+  DVA L   G    +      G  +DD ++      +  +VVNAG  +KDLA +E+    F
Sbjct:    5 KRTPLFDAHIAAGAKMVDFAGWEMPIHYGSQLKEHEI-VRSDAGMFDVSHMTVIDITGADAKAWLQKLIANDVAKLGFEGKALYSGMLTPEGTVVDDLIVYLTAYGY-RMVVNAGTTEKDLAWMESQKAGF 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHLL2 (Aminomethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL+ +H   G K++ F G+ MP+QY   I E     R+   LFDVSHM    ++G     FL+ L   D++ ++ G     +    +GG +DD +I ++  +  +L+VNA    KD A I+ H+ +F
Sbjct:    1 MKKTALYSWHEQAGAKIIDFGGYLMPVQYSGIIAEHKA-VREAAGLFDVSHMGNFYVRGVRAGEFLQYLTTNDLSKVSDGEAQYNLMLYTDGGVVDDLIIYRIDAETYFLIVNASNAQKDYAWIQKHIGAF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACTN (Aminomethyltransferase OS=Bacteroides thetaiotaomicron GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG   + FL+K+   +VA L PG    T F NE GG +DD ++   + +   LVVNA   +KD
Sbjct:    1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNAVG-VFDVSHMGEFWVKGPQALAFLQKVTSNNVAALVPGKIQYTCFPNEEGGIVDDLLVYCYEPEKYLLVVNAANIEKD 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROMT (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L +T L+      GGKMVPFA W MP+ +   I E     R+N  +FD+SHM  + LKGK+    L+ LV +DV  + P     TVF  ENGG  DD +I         ++ I LV+NA  ++ D+  + +++
Sbjct:    3 LLQTPLYQECKELGGKMVPFANWEMPVSFSGLIEEHNA-VRKNVGMFDISHMGVVQLKGKNIKSALQNLVPSDVFRIGPSEACYTVFLKENGGIQDDLIIYDQGVLDTNEESIVLVINAARKESDIEWLSSNL 134          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ALTMD (Aminomethyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  228 TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            TALH  H+  G KMV F GW MPI Y   I E     RQ+  +FDVSHM  + +KG     +L+ L+  DVA L   G    +   NE GG +DD ++    + +  LVVN+  R+KD+  + +  + F
Sbjct:    5 TALHTKHLEAGAKMVDFFGWDMPINYGSQIEEHHA-VRQDAGMFDVSHMTIVDVKGAQAKAYLQYLLANDVAKLKDKGKALYSGMLNEEGGVVDDLIVYHFDETNYRLVVNSATREKDMNWLMSKAEGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THISH (Aminomethyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L++ H+  G +MV F GWSMP+ Y   I E     R++  +FDVSHM  + ++G     +L  L+  DVA L  PG    +      GG +DD +   + D    LVVNA  RDKDLA +      F
Sbjct:    3 KQTPLYEKHLEAGARMVDFGGWSMPLHYGSQIEEHHA-VRRDAGMFDVSHMTVVDVQGNGARDYLRFLLANDVAKLKVPGKALYSCMLTPEGGVVDDLITYYLSDTFYRLVVNAATRDKDLAWMRDRATGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEPBP (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 49/144 (34.03%), Postives = 70/144 (48.61%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGD-VSWH 641
            LK+T LH  H   G KMVPF GW MP+QY   I++  L  R N  +FDVSHM  + + G   D + FLE +    ++ +  G        NE GG +DD  + K  D    +  NA   +    H+  ++K   +   D  +WH
Sbjct:    3 LKQTPLHSIHKEMGAKMVPFGGWDMPVQY-TGIIQEHLATRANAGIFDVSHMGEIFVTGDANDVLDFLESVTCNTISTMKEGQVQYNAVVNEVGGLVDDITVYKFNDTKYMICSNASNFEAVTQHLLKYVKGNVSIANDSKNWH 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEPBA (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 49/144 (34.03%), Postives = 70/144 (48.61%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGD-VSWH 641
            LK+T LH  H   G KMVPF GW MP+QY   I++  L  R N  +FDVSHM  + + G   D + FLE +    ++ +  G        NE GG +DD  + K  D    +  NA   +    H+  ++K   +   D  +WH
Sbjct:    3 LKQTPLHSIHKEMGAKMVPFGGWDMPVQY-TGIIQEHLATRANAGIFDVSHMGEIFVTGDANDVLDFLESVTCNTISTMKEGQVQYNAVVNEVGGLVDDITVYKFNDTKYMICSNASNFEAVTQHLLKYVKGNVSIANDSKNWH 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ERWT9 (Aminomethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L   H A+G +MV F GW MP+ Y  S M+     R++  +FDVSHM  + L G     FL  L+  DVA L  PG    +   N + G IDD ++  + +D   LVVN+  R+KDLA I  H  ++
Sbjct:    3 QQTPLFAQHQASGARMVDFHGWMMPLHY-GSQMDEHHAVRRDAGMFDVSHMTIVDLHGARTREFLRYLLANDVAKLTQPGKALYSAMLNASAGVIDDLIVYFISEDFFRLVVNSATREKDLAWIVEHAAAY 132          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_ENT382.065e-1635.57Aminomethyltransferase OS=Enterobacter sp. (strain... [more]
GCST_CHRVO2.065e-1638.17Aminomethyltransferase OS=Chromobacterium violaceu... [more]
GCST_CHLL22.697e-1634.35Aminomethyltransferase OS=Chlorobium limicola (str... [more]
GCST_BACTN2.697e-1640.83Aminomethyltransferase OS=Bacteroides thetaiotaomi... [more]
GCST_PROMT3.523e-1636.84Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_ALTMD3.523e-1637.98Aminomethyltransferase OS=Alteromonas macleodii (s... [more]
GCST_THISH4.601e-1637.40Aminomethyltransferase OS=Thioalkalivibrio sp. (st... [more]
GCST_LEPBP4.601e-1634.03Aminomethyltransferase OS=Leptospira biflexa serov... [more]
GCST_LEPBA4.601e-1634.03Aminomethyltransferase OS=Leptospira biflexa serov... [more]
GCST_ERWT94.601e-1638.17Aminomethyltransferase OS=Erwinia tasmaniensis (st... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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