FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_HALOH (Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +KKT L + H   G +++ F GWSMP+QY  SI+E     R    LFDVSHM  + ++G   +  L+K+V  +VA L  G    T    ++GG IDD ++  +  D   +VVNA   +KD
Sbjct:    1 MKKTPLFEIHKELGARLIEFHGWSMPVQYT-SIIEEHKAVRNQCGLFDVSHMGEILVEGPGALESLQKIVTNNVARLKKGQVLYTPMCKDDGGIIDDLLVYCLGQDKYLMVVNASNIEKD 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECOL6 (Aminomethyltransferase OS=Escherichia coli O6 GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CUPTR (Aminomethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 49/127 (38.58%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 596
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E+GG IDD ++    +D   LVVNAG    D+  I A
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHHA-VRNDAGMFDVSHMCVVDLAGPNTRAFLRGLLANNVDKLQTPGKALYSCMLDEHGGVIDDLIVYFFAEDRFRLVVNAGTAVGDIDWIRA 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALAR (Aminomethyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDLA I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLAWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCUA (Aminomethyltransferase OS=Mycobacterium ulcerans (strain Agy99) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 596
            SDA  L +  L D H A G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA      +A ++A
Sbjct:    2 SDAPELMQGPLEDRHRALGASFAEFGGWLMPVSYTGTVSEHNAT-RNAAGLFDVSHLGKALVRGPGAAEFVNSALTNDLRRIGPGKAQYTLCCNESGGVIDDLIAYYVADDEIFLVPNAANTAAVVAALQA 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LISMF (Aminomethyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   DKD   +  +++      GDVS
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTDKDFEWMVKNIR------GDVS 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LISMC (Aminomethyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   DKD   +  +++      GDVS
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTDKDFEWMVKNIR------GDVS 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CITK8 (Aminomethyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_RALEJ (Aminomethyltransferase OS=Ralstonia eutropha (strain JMP134) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 52/146 (35.62%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK------SFTAKGGDVS 635
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I A         + T + GDV+
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRSDAGMFDVSHMCVVDLNGANTRAFLRGLLANNVDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTALGDIEWIRARNDATGSGVTITPRRGDVA 147          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_RALEH (Aminomethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I A      A G DV+
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRTDAGMFDVSHMCVVDLAGANTRSFLRGLLANNVDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTALGDIEWIRARN---AATGSDVT 138          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_HALOH5.087e-1538.33Aminomethyltransferase OS=Halothermothrix orenii (... [more]
GCST_ECOL65.087e-1537.40Aminomethyltransferase OS=Escherichia coli O6 GN=g... [more]
GCST_CUPTR5.087e-1538.58Aminomethyltransferase OS=Cupriavidus taiwanensis ... [more]
GCST_SALAR6.644e-1534.23Aminomethyltransferase OS=Salmonella arizonae (str... [more]
GCST_MYCUA6.644e-1535.11Aminomethyltransferase OS=Mycobacterium ulcerans (... [more]
GCST_LISMF6.644e-1533.09Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_LISMC6.644e-1533.09Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_CITK86.644e-1533.56Aminomethyltransferase OS=Citrobacter koseri (stra... [more]
GCST_RALEJ8.677e-1535.62Aminomethyltransferase OS=Ralstonia eutropha (stra... [more]
GCST_RALEH8.677e-1537.14Aminomethyltransferase OS=Ralstonia eutropha (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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