FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ACIAD (Chaperone protein dnaK OS=Acinetobacter sp. (strain ADP1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.758e-62
Identity = 122/238 (51.26%), Postives = 170/238 (71.43%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V + D+E L+G +AK Q   NP NT+F  KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A +++S+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+A+G+DKK    G++ V ++DLGGGTFDVS++ I     +   EV +T GDT LGGEDFD  ++++ V+EFK+++  ++  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYKDSEILVGQSAKRQAVTNPKNTLFAIKRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQVSAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFGMDKKE---GDRKVAVYDLGGGTFDVSIIEIADLDGDQQIEVLSTNGDTFLGGEDFDTALIDYLVEEFKKEQSVNLKNDPLALQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VESOH (Chaperone protein dnaK OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dnaK PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 128/240 (53.33%), Postives = 167/240 (69.58%), Query Frame = 1
Query:    1 RTTPSYVGFT--DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +     E L+G AAK Q   NP NT++  KRLIGRRF + +VQ D+ L P+K++        + V    + K+ AA EIS+ V+ KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGLNV RIINEPTAAA+AYG+DK     G+K V+++DLGGGTFDVS++ +E    E  FEV +T GDT LGGEDFD RM+ + V EFK+ +  D++ +P AL+RL+ A
Sbjct:   34 RTTPSIIAYPKDSEEVLVGQAAKRQAVTNPENTLYAIKRLIGRRFEEDAVQKDIDLVPYKIVKADNGDAWVKV----KNKKMAAPEISAKVIGKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGVDKVK---GDKTVVVYDLGGGTFDVSIIEMEDIDGEKHFEVLSTNGDTFLGGEDFDQRMIGYLVDEFKKDQGVDLTNDPMALQRLKEA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 123/235 (52.34%), Postives = 162/235 (68.94%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF++++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 123/235 (52.34%), Postives = 162/235 (68.94%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF++++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 123/235 (52.34%), Postives = 162/235 (68.94%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF++++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_NITOC (Chaperone protein dnaK OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dnaK PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 129/239 (53.97%), Postives = 170/239 (71.13%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT + E L+G +AK Q   NP NT++  KRLIGRRF +  VQ D+K+ P+K++   AD     V   G  K+ A  E+S+ VL KM++ AE YLG  ++ AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV +T GDT LGGEDFD R++++  +EFK+++  D+ G+P A++RL+ A
Sbjct:   34 RTTPSVVAFTKEGETLVGQSAKRQAITNPQNTLYAIKRLIGRRFDEEVVQRDIKMVPYKIVK--ADNGDAWVEATG--KKMAPPEVSANVLRKMKKTAEDYLGEEVEAAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKKR---GDQKIAVYDLGGGTFDVSIIEIAEVEGEHQFEVLSTNGDTFLGGEDFDKRIIDYIAEEFKKEQSIDLRGDPLAMQRLKDA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: HSP7M_DICDI (Heat shock 70 kDa protein, mitochondrial OS=Dictyostelium discoideum GN=mhsp70 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 127/235 (54.04%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ++++G  AK Q+  N  NT+F  KRLIGRRF D   + DM + P+K++ GP       V  KG  K  +  E  +MVL KM+E AE  LG  + +AV+TVPAYF+DSQRQAT+DAG IAGL V RIINEPTAAA+AYG  K       K V ++DLGGGTFD+S+L I  G+FEV+AT GDT LGGEDFDN ++ HFV EFK++K  D++ +  A +RLR A
Sbjct:   62 RTTPSVVAFTEDNQKIVGLPAKRQMVTNAENTLFATKRLIGRRFDDPMTKKDMTMVPYKIVKGPNGDAWFEV--KG--KMISPSEAGAMVLQKMKETAETNLGGPVTDAVITVPAYFDDSQRQATRDAGTIAGLKVQRIINEPTAAALAYGFKKDE----PKTVAVYDLGGGTFDISILEIVGGVFEVRATNGDTFLGGEDFDNALLEHFVAEFKKEKGIDLTKDTMATQRLREA 288          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_THET8 (Chaperone protein dnaK OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaK PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 126/231 (54.55%), Postives = 162/231 (70.13%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRL 693
            R TPS V F D E L+G  AK Q  +NP  T+F+ KR IGRRF +  VQ + K  P+KV+ GP      GV  + + K +  EEIS+M+L K+ E A   LG  I  AV+TVPAYFN++QR+AT +AG IAGL V+RIINEPTAAA+AYGLDKK    G + VL+FDLGGGTFDV++L I EG+FEVKAT+GDTHLGG D D+ +VN   +EFK++   D+  + +AL+RL
Sbjct:   34 RVTPSVVAFRDGETLVGRMAKRQAVLNPEGTIFEIKRFIGRRFEE--VQEEAKRVPYKVVPGPDG----GVRVEVKGKLYTPEEISAMILRKLVEDASKKLGEKITKAVITVPAYFNNAQREATANAGRIAGLEVLRIINEPTAAALAYGLDKK----GNETVLVFDLGGGTFDVTILEIGEGVFEVKATSGDTHLGGSDMDHAIVNWLAEEFKKEHGVDLKADRQALQRL 254          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSYIN (Chaperone protein dnaK OS=Psychromonas ingrahamii (strain 37) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 125/238 (52.52%), Postives = 166/238 (69.75%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T+ E L+G  AK Q   NP NT+F  KRLIGRR+ D  VQ D+K+ P+K++   AD     V   G +   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA AYG+D   +S G+  + ++DLGGGTFD+S++ I+    E  FEV +T GDTHLGGEDFDNR++N  V EFK ++  D++ +P A++R++ A
Sbjct:   34 RTTPSIIAYTEGETLVGQPAKRQSVTNPQNTLFAIKRLIGRRYEDEEVQRDIKIMPYKIVK--ADNGDAWVEAHGNK--MAPPQISAEVLKKMKKTAEDYLGEKVTGAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAFAYGVD---SSKGDSVIAVYDLGGGTFDISIIEIDEVDGEKTFEVLSTNGDTHLGGEDFDNRLINFLVAEFKTQQGFDLTNDPLAMQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 125/236 (52.97%), Postives = 166/236 (70.34%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F+D  ERL+G  AK Q   NP  T+F  KRLIGRR+ D +V+ D +L P+K+  AG  D  +     + + K ++  +IS+  L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK         + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF++++  ++  +  AL+RL+ A
Sbjct:   34 RTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDPTVEKDKQLVPYKIAKAGNGDAWV-----EADGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKAG----TIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEA 260          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACIAD4.758e-6251.26Chaperone protein dnaK OS=Acinetobacter sp. (strai... [more]
DNAK_VESOH6.214e-6253.33Chaperone protein dnaK OS=Vesicomyosocius okutanii... [more]
DNAK_RHOS76.214e-6252.34Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT6.214e-6252.34Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA6.214e-6252.34Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_NITOC6.214e-6253.97Chaperone protein dnaK OS=Nitrosococcus oceani (st... [more]
HSP7M_DICDI8.116e-6254.04Heat shock 70 kDa protein, mitochondrial OS=Dictyo... [more]
DNAK_THET88.116e-6254.55Chaperone protein dnaK OS=Thermus thermophilus (st... [more]
DNAK_PSYIN8.116e-6252.52Chaperone protein dnaK OS=Psychromonas ingrahamii ... [more]
DNAK_NITWN8.116e-6252.97Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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