FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: HSP7M_PEA (Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.184e-66
Identity = 132/235 (56.17%), Postives = 166/235 (70.64%), Query Frame = 1
Query:    1 RTTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F   +E L+G  AK Q   NPTNT+F  KRLIGRRF DA  Q +MK+ P+K++  P     +  N     +Q++  +I + VL K++E AEAYLG TI  AVVTVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA++YG++ K     E  + +FDLGGGTFDVS+L I  G+FEVKAT GDT LGGEDFDN +++  V EFKR +  D++ +  AL+RLR A
Sbjct:   84 RTTPSVVAFNQKSELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDAQTQKEMKMVPYKIVRAPNGDAWVEAN----GQQYSPSQIGAFVLTKIKETAEAYLGKTISKAVVTVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNK-----EGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTESIDLAKDKLALQRLREA 309          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSM (Chaperone protein dnaK OS=Geobacter sp. (strain M21) GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.184e-66
Identity = 129/235 (54.89%), Postives = 174/235 (74.04%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + F ++ ERL+G  AK Q   NP NT++  KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++  EIS+MVL KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAAA+AYGLDKK     ++ + +FDLGGGTFDVS+L + EG+FEVK+T GDT LGGEDFD ++++H   EFK+ +  D+ G+  AL+RL+ A
Sbjct:   34 RTTPSMIAFAESGERLVGQQAKRQAVTNPENTLYAIKRLIGRKFDTEAVKKDIAISPFKIVK--ADNSDAWVEVRGQK--YSPPEISAMVLQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGLDKKK----DEKIAVFDLGGGTFDVSILELGEGVFEVKSTNGDTFLGGEDFDQKIIDHIADEFKKDQGIDLRGDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_BARQU (Chaperone protein dnaK OS=Bartonella quintana GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.184e-66
Identity = 132/235 (56.17%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD  ERL+G  AK Q   NP  T+F  KRLIGRRF D  V+ D  L P+K++ G  D     V   G  K+++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +F  EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSVVAFTDGGERLVGQPAKRQAVTNPEGTIFAVKRLIGRRFDDPMVEKDKALVPYKIVKG--DNGDAWVEEAG--KKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK----DGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADEFKKEQGIDLKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_BARHE (Chaperone protein dnaK OS=Bartonella henselae GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.184e-66
Identity = 132/235 (56.17%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD  ERL+G  AK Q   NP  T+F  KRLIGRRF D  V+ D  L P+K++ G  D     V   G  K+++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +F  EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSVVAFTDGGERLVGQPAKRQAVTNPEGTIFAVKRLIGRRFDDPMVEKDKALVPYKIVKG--DNGDAWVEEAG--KKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK----DGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADEFKKEQGIDLKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 132/235 (56.17%), Postives = 164/235 (69.79%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F    E L+G  AK Q   NPTNTVF  KRLIGRRF D   Q +MK+ PFK++  P     +  N     +Q++  +I + VL KM+E AEAYLG ++  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA++YG++ K     E  + +FDLGGGTFDVS+L I  G+FEVKAT GDT LGGEDFDN +++  V EFKR +  D+S +  AL+RLR A
Sbjct:   83 RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEAN----GQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNK-----EGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLREA 308          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP75_RAT (Stress-70 protein, mitochondrial OS=Rattus norvegicus GN=Hspa9 PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 130/235 (55.32%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT +  KRLIGRR+ D  VQ D K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGLDK      +K + ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A
Sbjct:   85 RTTPSVVAFTPDGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE----DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREA 311          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP75_MOUSE (Stress-70 protein, mitochondrial OS=Mus musculus GN=Hspa9 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 130/235 (55.32%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT +  KRLIGRR+ D  VQ D K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGLDK      +K + ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A
Sbjct:   85 RTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE----DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREA 311          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP75_CRIGR (Stress-70 protein, mitochondrial OS=Cricetulus griseus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 130/235 (55.32%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT +  KRLIGRR+ D  VQ D K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGLDK      +K + ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A
Sbjct:   85 RTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE----DKIIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREA 311          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VIBPA (Chaperone protein dnaK OS=Vibrio parahaemolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 129/238 (54.20%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTT S + +TD E L+G  AK Q   NPTNT+F  KRLIGRRF D  VQ D+++ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EFK+++  D+  +P A++R++ A
Sbjct:   34 RTTASVIAYTDGETLVGQPAKRQAVTNPTNTLFAIKRLIGRRFEDEEVQRDIEIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKKG---GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLATNGDTHLGGEDFDNRLINYLVDEFKKEQGIDLKNDPLAMQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCM (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 130/238 (54.62%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+    G++ + ++DLGGGTFD+S++ I+    E  FEV +T GDTHLGGEDFDNRM+N+ V EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSVIAYTDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKQG---GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVDEFKKDQGIDLRNDPLAMQRLKEA 264          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7M_PEA3.184e-6656.17Heat shock 70 kDa protein, mitochondrial OS=Pisum ... [more]
DNAK_GEOSM3.184e-6654.89Chaperone protein dnaK OS=Geobacter sp. (strain M2... [more]
DNAK_BARQU3.184e-6656.17Chaperone protein dnaK OS=Bartonella quintana GN=d... [more]
DNAK_BARHE3.184e-6656.17Chaperone protein dnaK OS=Bartonella henselae GN=d... [more]
HSP7M_PHAVU4.159e-6656.17Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
GRP75_RAT4.159e-6655.32Stress-70 protein, mitochondrial OS=Rattus norvegi... [more]
GRP75_MOUSE4.159e-6655.32Stress-70 protein, mitochondrial OS=Mus musculus G... [more]
GRP75_CRIGR4.159e-6655.32Stress-70 protein, mitochondrial OS=Cricetulus gri... [more]
DNAK_VIBPA4.159e-6654.20Chaperone protein dnaK OS=Vibrio parahaemolyticus ... [more]
DNAK_VIBCM4.159e-6654.62Chaperone protein dnaK OS=Vibrio cholerae serotype... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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