FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHEHH (Chaperone protein dnaK OS=Shewanella halifaxensis (strain HAW-EB4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 131/238 (55.04%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T  E L+G +AK Q   NPTNTV+  KRLIGRRF D  VQ D+ + PFK+I+  AD     V  +G  K+ A  +IS+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNRM+ +   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTADETLVGQSAKRQAVTNPTNTVYAIKRLIGRRFKDDEVQRDVDIMPFKIIS--ADNGDAWVEAQG--KKMAPPQISAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRMIKYLADEFKKEQGLDLRNDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB9 (Chaperone protein dnaK OS=Shewanella baltica (strain OS195) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 129/238 (54.20%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E ++G  AK Q   NPTNT F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    +  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTDDETIVGSPAKRQAVTNPTNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIA--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB8 (Chaperone protein dnaK OS=Shewanella baltica (strain OS185) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 129/238 (54.20%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E ++G  AK Q   NPTNT F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    +  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTDDETIVGSPAKRQAVTNPTNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIA--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB5 (Chaperone protein dnaK OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 129/238 (54.20%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E ++G  AK Q   NPTNT F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    +  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTDDETIVGSPAKRQAVTNPTNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIA--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB2 (Chaperone protein dnaK OS=Shewanella baltica (strain OS223) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 129/238 (54.20%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E ++G  AK Q   NPTNT F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    +  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTDDETIVGSPAKRQAVTNPTNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIA--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PARL1 (Chaperone protein dnaK OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 126/235 (53.62%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G +AK Q   NPTNT+F  KRLIGR + D + Q D  + P+ ++  P     +    +   ++++  +IS+ +L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK   +    + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EFK++   D+ G+  AL+RL+ A
Sbjct:   34 RTTPSMVAFTQDGERLVGQSAKRQAVTNPTNTLFAIKRLIGRSYDDPTTQKDKGMVPYDIVKAPNGDAWV----EAHGEKYSPSQISAFILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKEGEL----IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKENGIDLRGDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GLUOX (Chaperone protein dnaK OS=Gluconobacter oxydans GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 129/235 (54.89%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD  ERL+G AAK Q   NP NT++  KRLIGRR+ D +VQ D ++ P+ ++ G  D     V  +GE+  +A  +I++ VL KM+E AE+YLG T+  AV+TVPAYFND+QRQAT+DAG IAGL V+RIINEPTAAA+AYGL K+ +      V ++DLGGGTFDVS+L I +G+ EVK+T GDT LGGEDFDNR++     EFK+ +  D+ G+  AL+RL+ A
Sbjct:   34 RTTPSMVAFTDNGERLVGQAAKRQAVTNPANTLYAVKRLIGRRYDDPTVQKDKEMVPYAIVRG--DNGDAWVEARGEK--YAPSQIAAYVLGKMKETAESYLGETVSQAVITVPAYFNDAQRQATRDAGKIAGLEVLRIINEPTAAALAYGLGKRDSG----TVAVYDLGGGTFDVSILEISDGVIEVKSTNGDTFLGGEDFDNRIIGFLADEFKKDQGIDLRGDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_DESOH (Chaperone protein dnaK OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 131/236 (55.51%), Postives = 171/236 (72.46%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V    D ERL+G  AK Q   NP NTVF  KRLIGR+F  A VQ D+K+ P+K+  AG  D   + +N +  +KQ++  EISS +L  ++  AE YLG  + +AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAA++AYGLDKK     ++ + +FDLGGGTFD+S+L I +G+FEVK+T GDTHLGGEDFD R+V++   EFK+ +  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIVAINEDGERLVGQVAKRQAITNPENTVFGVKRLIGRKFDSAEVQHDIKVLPYKIEKAGNGD---LRINLR--DKQYSPAEISSFILADIKHTAEEYLGEKVTDAVITVPAYFSDSQRQATKDAGKIAGLNVLRIINEPTAASLAYGLDKKK----DEKIAVFDLGGGTFDISVLEIGDGVFEVKSTNGDTHLGGEDFDLRVVDYLASEFKKDQGIDLRQDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ALTMD (Chaperone protein dnaK OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.598e-65
Identity = 133/239 (55.65%), Postives = 170/239 (71.13%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G +AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PFK++   AD     V  KGE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V+EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTNDGETLVGQSAKRQAVTNPENTLFAIKRLIGRRFQDKEVQRDIDIMPFKIVG--ADNGDAWVEAKGEK--MAPPQVSAEVLKKMKKTAEDYLGEEVTGAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKKQ---GDNVVAVYDLGGGTFDISIIEIDEVDGEHTFEVLATNGDTHLGGEDFDNRVINYLVEEFKKDQGIDLRKDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VIBFM (Chaperone protein dnaK OS=Vibrio fischeri (strain MJ11) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 128/238 (53.78%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTT S + +TD E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+++ PFK++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AVVTVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EF++++  ++  +P A++R++ A
Sbjct:   34 RTTASVIAYTDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFEDEEVQRDIEIMPFKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVVTVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRTIAVYDLGGGTFDISIIEIDNVDGEQTFEVLATNGDTHLGGEDFDNRLINYLVSEFEKEQGINLKNDPLAMQRVKEA 264          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHEHH4.598e-6555.04Chaperone protein dnaK OS=Shewanella halifaxensis ... [more]
DNAK_SHEB94.598e-6554.20Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_SHEB84.598e-6554.20Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_SHEB54.598e-6554.20Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_SHEB24.598e-6554.20Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_PARL14.598e-6553.62Chaperone protein dnaK OS=Parvibaculum lavamentivo... [more]
DNAK_GLUOX4.598e-6554.89Chaperone protein dnaK OS=Gluconobacter oxydans GN... [more]
DNAK_DESOH4.598e-6555.51Chaperone protein dnaK OS=Desulfococcus oleovorans... [more]
DNAK_ALTMD4.598e-6555.65Chaperone protein dnaK OS=Alteromonas macleodii (s... [more]
DNAK_VIBFM6.005e-6553.78Chaperone protein dnaK OS=Vibrio fischeri (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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