FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_AGRT5 (Chaperone protein dnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.380e-67
Identity = 129/235 (54.89%), Postives = 171/235 (72.77%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F+D  ERL+G  AK Q   NPTNT+F  KRLIGRR+ D +V+ D  L PF+++ G      +    K ++K ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL+V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK+ +  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKALVPFEIVKGDNGDAWV----KAQDKNYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKE----GKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLAGEFKKDQGIDLKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_DESAH (Chaperone protein dnaK OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.094e-66
Identity = 133/235 (56.60%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  T+  +RL+G  AK Q   NP NTVF  KRLIGR+F    +QGD K+ P+K+ A       I  N +G  KQ +  EISS +L  +++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAA++AYGLDKK    GE+ +++FDLGGGTFDVS+L I +G+FEVK+T GDTHLGGEDFD R++++   EFK+ +  DI G+  AL+RL+ A
Sbjct:   34 RTTPSVVALTEGGDRLVGQTAKRQAITNPENTVFGVKRLIGRKFDSPQIQGDKKVLPYKIEASANGDTRI--NLRG--KQHSPAEISSFILANIKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGKIAGLTVKRIINEPTAASLAYGLDKK----GEEKIVVFDLGGGTFDVSVLEIGDGVFEVKSTNGDTHLGGEDFDLRIIDYIADEFKKSQGIDIRGDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_MESSB (Chaperone protein dnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.429e-66
Identity = 133/235 (56.60%), Postives = 170/235 (72.34%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD+ ERL+G  AK Q   NP NT F  KRLIGRRF D  V+ D KL P+K++   AD     V   G +  ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+VN+   EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIVAFTDSDERLVGQPAKRQAVTNPENTFFAIKRLIGRRFEDPMVEKDKKLVPYKIVK--ADNGDAWVESHGTK--YSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKE----GKTIAVYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKEQGIDLKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SILST (Chaperone protein dnaK OS=Silicibacter sp. (strain TM1040) GN=dnaK PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.867e-66
Identity = 128/234 (54.70%), Postives = 168/234 (71.79%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD ERL+G  AK Q   NP NT+F  KRLIGRRF D+ +  D K  PF VI G      +    + + ++++  +IS+ +L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T    + + ++DLGGGTFDV++L I++G+FEVK+T GDT LGGEDFD R+VN+   EFK++   D++ +  AL+RL+ A
Sbjct:   34 RTTPSIVAFTDEERLVGQPAKRQAVTNPDNTIFGVKRLIGRRFDDSDLAKDKKNLPFAVINGGNGDAWV----EAKSEKYSPSQISAFILGKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAET----QTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTKDKMALQRLKEA 259          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 130/235 (55.32%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT +  KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGLDK      +K + ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A
Sbjct:   85 RTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE----DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREA 311          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP75_HUMAN (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 130/235 (55.32%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT +  KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGLDK      +K + ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A
Sbjct:   85 RTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE----DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREA 311          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP75_BOVIN (Stress-70 protein, mitochondrial OS=Bos taurus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 130/235 (55.32%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT +  KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGLDK      +K + ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A
Sbjct:   85 RTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE----DKIIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREA 311          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSL (Chaperone protein dnaK OS=Geobacter sulfurreducens GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 131/235 (55.74%), Postives = 172/235 (73.19%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F ++ ERL+G  AK Q   NP NT+F  KRLIGR++    V+ D+ + PFK++   AD     V  +G  K ++A EIS+MVL KM++ AE YLG T+ +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGLDKK     ++ + +FDLGGGTFD+S+L + +G+FEVK+T GDT LGGEDFD R+++    EFK+ +  D+ G+  AL+RL+ A
Sbjct:   34 RTTPSMVAFAESGERLVGQQAKRQAVTNPENTLFAIKRLIGRKYDTEEVRKDISISPFKIVK--ADNGDAWVEARG--KMYSAPEISAMVLQKMKQTAEDYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGLDKKK----DEKIAVFDLGGGTFDISILELGDGVFEVKSTNGDTFLGGEDFDQRVIDWIADEFKKDQGIDLRGDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_BART1 (Chaperone protein dnaK OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 133/235 (56.60%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD  ERL+G  AK Q   NP  TVF  KRLIGRRF D  V+ D  L P+K++ G  D     V   G  K+++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +F  EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSVVAFTDGGERLVGQPAKRQAVTNPEGTVFAVKRLIGRRFDDPMVEKDKALVPYKIVKG--DNGDAWVEEAG--KKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK----DGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADEFKKEQGIDLKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_BARBK (Chaperone protein dnaK OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 130/235 (55.32%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD+ ERL+G  AK Q   NP  TVF  KRLIGRRF D  V+ D  L P+K++ G      +  N     K+++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD  +V++F  EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSVVAFTDSGERLVGQPAKRQAVTNPEGTVFAVKRLIGRRFDDPMVEKDKALVPYKIVKGDNGDAWVEEN----SKKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK----DGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMCLVSYFADEFKKEQGIDLKNDKLALQRLKEA 260          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_AGRT58.380e-6754.89Chaperone protein dnaK OS=Agrobacterium tumefacien... [more]
DNAK_DESAH1.094e-6656.60Chaperone protein dnaK OS=Desulfobacterium autotro... [more]
DNAK_MESSB1.429e-6656.60Chaperone protein dnaK OS=Mesorhizobium sp. (strai... [more]
DNAK_SILST1.867e-6654.70Chaperone protein dnaK OS=Silicibacter sp. (strain... [more]
GRP75_PONAB2.438e-6655.32Stress-70 protein, mitochondrial OS=Pongo abelii G... [more]
GRP75_HUMAN2.438e-6655.32Stress-70 protein, mitochondrial OS=Homo sapiens G... [more]
GRP75_BOVIN2.438e-6655.32Stress-70 protein, mitochondrial OS=Bos taurus GN=... [more]
DNAK_GEOSL2.438e-6655.74Chaperone protein dnaK OS=Geobacter sulfurreducens... [more]
DNAK_BART12.438e-6656.60Chaperone protein dnaK OS=Bartonella tribocorum (s... [more]
DNAK_BARBK2.438e-6655.32Chaperone protein dnaK OS=Bartonella bacilliformis... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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